HsaINT0159824 @ hg19
Intron Retention
Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:11350]
Coordinates
chr11:8739288-8747756:-
Coord C1 exon
chr11:8747620-8747756
Coord A exon
chr11:8739440-8747619
Coord C2 exon
chr11:8739288-8739439
Length
8180 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
TAACTCTTCCTCCTCTGCAGGAG
3' ss Score
9.94
Exon sequences
Seq C1 exon
AAAATCCTTTGAGTTTGAGGATGCATCCAGTCTCCAGTCCCTGTACCCCTCTTCTCCCACTGAGAATGGTACTGAGAACCAACCCAAGTTTGGATCCAAAAGCACTTTAGAAGAAAATGCCTATGAAGATATTGTGG
Seq A exon
GTAAGCAATGGCAGAGGTGGCACCTGGGTCATCTCAGGGGGCTGCAGAAGAACAGGAACAGGAGGAGACACCTAGATTGACCTCCTTCACTGTGGGCAGGCATGGTCCCACCTTCTGGAACTCCTCCTGGAATGGGACATCAGGGGAAGCACCTTAGCTTAGACAGAGTGGCTTTGTGATTAAAAGCCTGGCTCTTGAATGAACTGAAATCCAAAGGACCTTTGGGGACACGAGAAGGAGAAAACAACATCATTCCTTTCCTTTATTTTTGGAAGGCTTTGAAGTCCAACAGGCCCTCTTCCTTAGCTGTGTGCCCTTAAGGCAAATCACTTAACTTTTGTGAAGACTCTGTTTTTCTCTTATAACATGATGATGTGACTATATTAACAACAACAATAATAGTAATAATATTTCGAGCCGGGCATGGTGGCTCGTGCCTGTAATTCCAGCACTTTGGGAGGCCGAGGCTGGTGGATCACCTAAGGTCAGGAGTTCGAGACCAGCCTCCATCTCTACTAAAAATACAAAAAATTAGCTGAGCATGGTGGCAGGCACCTGTAATCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCTGAGATCGTGCCATTGCACTCCTGCCTGGGCAACATGAGTGAAACTCCGTCTCAAAAAAAAAAAAAAAAGTAATATTTCATAAGGTTATTGTTAGAATTAAATAAGATTGAGTGTCTGGTGCAGGCCTGCTACCTGGTCAGAGATGGCCATCTTCTTTCTGTGTTCTTACATGGTGGAAGGGGCGGAGGGAGTTCTCTGGGGTCTCTTTTAAAAGGGCCCTAATTGGTGAAGGCCCTGCACTCATGACCTAATCACCTCCCAGAGGCCTCACCTGTGTTTCCACATAGGAATTTTGGGGGACAGAAACATTCAGTCTATTGTACAAGCTAACACATTTCATTGCCCCAGTTTCATGGTGCTGGCAGAAGACACGAGACCCCTGGGTCGCAAAGGACTTTATTACTTATGGCACAGTAGGCAGCATGAGCTTCGTGTTCACACGGGTTTCCCCTTGTGCCTAAGTCCCATGGGGCGGTGTGGAGAAGGCCCAGGTGGAAGCTGCACACACTGCAGGTCCATGTCCCAGCTGGGGAGCCCAAGCGTAGGAAACCCCAGTCTTTTCAGAGACTGCTGGCAAACCTGCCTAACCTTTGTCCTTGGAGGAGACATTATCTTTATCACTCTGGTCAGGAAACAAATCTGCCTCTGCCCTGAAGGGAGACACTATCTCTGTCTTCCAAGGCTGTTTGCTGTATAAATACCCTTTAAAATACAGTCTGGAACTGTCAGTTCCTCTTGTTCAGAAGAAGGGCAGAAATGCGAGACTCCATTGGGATTTGTCTTCCAACAGGTGGGAAGACATGGTATTGGCAAACTTGTGTTCACAGATCAGATGAAAGATAGAATGCTCTAGCCTGGGTTGCATTTGTTTTGTTTTTTGGCGTTCATTTCAATTCTATTAGCATCCTCATCAGTAAGGGGCTTTGATTCTGCCCAAGTGAAGTGTGCGTGTCAGTGTAGGTCAGTGAGGAGGAGAGAGGCTGTGTGCTGCCTGCTTGCTGGCTCCCTCTCTATGTCCCTGTCTTGCCTCTGTCTTGGGCCTTGAATCTGAAGAATGTGGTGTTAGTTAATACATGAGAGAGAGAAGTGGCCCAGGGTAGAGGGAAACCTCCAGATTATCAGAAGCCTGGAATCTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAAGCTCCGCATCCCGGGTTCATGCCATTCTTCTGCCTCAGCCTTCCCAGCAGCTGGGACTACAGGTGCCCGCCACCACACCTGGCTAATTTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGGCTTCATGATCCGCCTGCCTCGGTCTCCCAAAGTTCTGGGATTATAGGCGTGAGCCAGAAGCCTGGAATCTTATGAAGAGAGGGCCATCTGTTCCCTCATTTGATCTGAGCCATTGGTTTCACAGCCGTTTCCTTACCACTTGCTGGGCCATTGTTTCTGGGGAGACAGCAGCCATGCTGGGATGTGCAGGGACACTGCTTTCCCAGGAACAGAGCGTATAGTATGTAGCCATGCAAAACTGGGTCACAGCAGGAAGACTGTGGGAATGAGGTCCCTAGAACCGCAAAAGAGTTTGGGGAGGGAGGCCCTTTCCCTTACCACTGGGGAAAAGACAGCTTTGTACCTATAGGCCACCCAGAGCAGAGGTCAAGAGCTAGGGGCATCAGAACAAAAGATCCAGAAGCCAGGTGGGCAGTTAAGGAAGATGCCCCAACTGCAGCCCATACCCCAGTTCTACTCAGCCACCCAAGAGGCAGCCAGTGCTGTTCCTGTATTTCTCACCTCCTTATGCAAGACTAACATCCCAGAGTGGAAGAAAGTCCTCCCGAATGAGTGAGTAGGCAGAGGCCTAGACACACTTGCCCTCCTCTTTCCCTTCTCTCAAACCTGACCTAAGAAGGCCTGGGGAACAGCTGTGTTGCCCAGAACAGTTCTTCCAAAATTCTGCCCCCCAAACATTGCCCCAAAAAATCCTGAACAGAGCCCTGGATGGTGGAACTCTGGACAGAGAGAAATGGTTGAAGCCGTCCCTTTCTCAAATTATTTCAGTTCAGATGATCCAAGAACGTATCCCCACAGGAAATCCTTGTCAGATAATAGAGAATGGGAGGACCACAGGATTGCCAGCACCCAGCATAGTCAAGGGACATCAGAAAAACACAGCCCTCTCTGCCCACGGCAGCAGCCACACTGGGTGCTCCCAGGGTCCTGGGCAGCAAACTGACACATTGCAGTTTCTGCCAAACTAGAATGTACCCTGCAACAGGAGGTAGGGAGGGGGTGGGGCAACAGAGCTGCCTCCCCACTCATTAGGGAGGACTCTCTTCCACTCTGGGTGTTGCATGAGGAGTTAAAAAAAATATGGGAGCACCTTGGCTGCCTCTTGGGTGGCTGAGTACAGCTAGGGGTCAGCGCTGTGTGGGCAGAAGGTAGAGGTAGCTGCTCACCTGGCTTCTGGATCTTTGGAGCACTTAGAGAACAGGGAAAGAAGAGAGGGGGAGGATGCAGGAGAAAGGGAGGGGAGCGACCCAGGCACCAGTTTGGGAATATACTGCATCGGATGTTTAGGTTTTGCTTTGGCCTCGTGGGGTGGTGGGGGTGGTTTCCGGAGTCTGCAGTTAGGACAGTGCCCTGTGCGTGTTTTCCCTTTTTATGTCCCCATAGCAGCCCAATCTGAATTTCTGGGACCTGACTAGGGAGGCCAGAGGGAAATACAGAGGAAAATACTCTCTTTCTGTTAGATTCTGGTGGGTTTCCTTTTCCTTCCCTGGGGACAGGCCCGAGAGTTTGGAGCTCCCCACAAGGCTTCAGGGGGTGTCTTATTGCTGAACTCAGAATGGCAGTTTCCCGTCTTGCTTAGGACTGATCAGTGGCTCGGACTTCCTGGGAGCCGTCTCTCTGGTCTTGGCCCAGCCTGTGCTCTGTGGGGTGAAGGATGACTCTGACCCCGCTGGATCAGGCTCCTGCAGGCATGCAGGAATGGAGCTGTTGGGAGGCAGAGAGCCTAGTGCTCATCTCCATCTTGGGTCCTGGTGATTGGACTGGAGTCCTGTCTGTCATAGGTGGAGGGCCAGTTGGCCCCAAGACAAACATGTCTGTCTGTGAACAGTGGACTCGAATGGGGGTTGTGGAGGGTTTGCTGGCCTCCTGCCTACACTAGGCATGATGCCTGAGGAGCTGGGGTGGGGTACTCCCAAACATACTGAGGTTTACCTTGCTAACTTGCAGAAAAGGAGTTCGGAAAGAAAGTTACTGCCTTGCTGCTTCCAGGGCTGCTATTTCCCGCCTGTCCCATCTCACATCTGCCCCTGGAAGATGCTGCTATTCTACCAGGCCTTATGTTTGCATTCTGAGCCTGACACTTAAAAATGCACCCAAGGAAGCAGCTTGTTAAGGAATTATGTGGAGTGGCCTCGGCGCCTGAGCTGCATTCCTGCAGATTCCCACTCCCATCAGCTAGCCTGGGCTGAGGGAGCGTTTCCAGGAACTTCAGTGGGATGCAAGCCGGGGACCGGGCCAGTCAGCCTGGACTGCAAAGTCTTTTGAGCCTCCACTCTCTCTGGTTGCTTCCCTTATTTGCCCCCAGGCTGGGAAACAGTAAGGAGCAGAGGGCACCCACTGGGATGGAGGTTGCAGTGGGAAACAAAACAGCCAAGAGGTGCAGCCCAGGGAAGGTGCCGGGGCTGTCGAGAAATGGTGTCAAGGCTTGGAGGGTGGGCAACAGCCAGCCCCTTAGAGGCCCCAGTCTGATCTGTTGCCAGGGAGTTGGGCTCTTATCCTGGCCCTTTCTGTCCTGTGTGAGAGAGGGAAAAAGGCTGAGAACCAGGAGAAACAGCTGGTTGGAACCGGACGGAGGTTGTTGGGGAGGGAAGCTGCAGACCCAGGACCCTAGTAATGGGTGTGGTCCAGGAAGCTTAGGACTGTGTTTGGAGAAATTCTCAGTGCCTGTGCGTATACACACACCCCTTTCCTAACTGGTTTTTCCAGTTAGGTTGGGGCTGGGGGAGTGCTGTATGTGTGGTTAAGACCAAAGGAGTTATGGGGAGGAGTGAAAGGTTGTGGAGAGGAGTGGGAGGTTGTAGGGAGGAGTGGGAGGTTGTGGGGAGGAGTGGGAGCAGGGCCCAGAGGGGCTGGATTCTTCCTTTAAGAGGATTTGTGTGACACCTTTGGGCTCTGATAATCCCCTTTTAGAAGAGTGCAAAGCAGAAATTCTCGGTGATGCCTTTTGTCCCTTATTTCATCATCCAAGCTGGGAAAGGTTGAGACCTCTGGCTTCTCCAGCTGGGCTTGCTGAGGGCCAGGCCTTCAGGGAAGAGGGTCCACCTCTTCGTCCCTCTCCAAGGGTCATGTGGACTGTCCCAAGAAAGCTGTGTGGGCAGGAATGCAGGTAGAAATTTGCAGTCTGCCAGGCTCCCTGTCTCCCATTCATGCCCCTGCTGAATCTCCCATTCAGCCTTAGCTCCTTTAGCTCTGTCCTCCCTAGGATGTTCTGCACACCATTTCCCAGCCTACCGTCTCCTCCAACTCTGAGCCATTCCTTTGATACTTATTTGCTCTCAGCTGGTTCAGTTTAGTGGTCCAGGACTCAGGGTCCACTTGTCTCTGTACATCTCCATCCCCTGGTCCCCTGTCCACCTGGAGAGATGACTGGGAGAATCTATTTGAGACAGCTCCTCCGGGGCAGTCAGGAATGGTCCAGGAAGCTGAGAGATGAGTTAGGGCAGTGAAGGGACCAAGCTGAGGCTGGGGAGGCAGCGTGTGGGCTGCAGCCAGCCGTCTATTTGCTGGAGAACTGATTAGTGGCTTTGTTACATTAGACAGGATGTTAAACATTGCTGGAGAAGAGAGGCTGGCACAAGGGGCTGGGGAGGAGCAGGCCTTCCTGAAATTGAGTTTCCAGAGACAGGACCTATCTTGAGAACCTGATGTTGCTGGCTGTTTTCCCCTGGGTTGTCAGTGATGTGCACCAGGCTTGTACATCTATTACTTCCCTGGGCCTCAGTATCCTATGTCTTTTTCTTGGAGCTTTGGATTTTGTATCAATATTCAAAGCTCTTACTGTAGGGAAAAGAAGGAAGGAAGGAGGGAGTGAGGTGAAGGAGGGAAGGATGGAAAAAAAAGAGGGCTAGTCTTGGGACTCATGTCACACTCAGAAGCCATTGGAAGTTTAGAAAGCTCTATCTAAAGCAGTGGTTCTCAGTTGGGGGACAACTTCACTCTTCCCTCCCTCCATTCCTGCCTCCCTCCCTCTCTCTCCCTCCTTCCCTCTGTCCGTCCCAGAGAGCATCTGGCAGTGTCTGGAGACATTTTTGGCTGTTATAGCTAAGGAGATGCTAATGTCTCCTGGTGGATAGAAGCCAAGGTTGCCACTAAACATCCTAAAAATGGACAGGACAGTCTACCACAACAAGAATTATTCAACCCCAAATGTCAGTGGCTTGGAGAAACCCCTGGGATTGGGACAAGGCTTCCTATAGGTTGGGGATGACAATAAAGGCCCTGGCTGATCATGCAGTCCAAGGCAGTTTCGATTTGTTGAGCTTGGCATAAATGTTCTCCCTGCCGTGATGTGGACAGTGATGCTCTGGTCCTGTTTTAGGGGATCAGAAGACTGTGTCCTGGCATTCTCCCTTCTTAGTTCCCCCACCTCCTCACTCCTGCAGGGCATATGTTGGGGAAGGATCAAGAAGTAGAGAATCCATCCCCAACACCTCCCTAAGTGCCCCACAGTGGGGTAGGCTGGAGAAAACATGCAGGGGGTGCCGGGTTTGCTATTTGGCTTCTTGCGACAGGGCTGCTGGGCCAGCTCCGCTTAGTCAGGGCTCTGGAATGGAGACAAGTCATTTTAATAGCATGACTGTGTTACAGGAAAAGGTCTGTTCCATTGCTGGGGACTCTGCTTGGAGTTGGGAATCACTTAATCCAGTCCCAAATCCCAGTGACCCATCTTTGACTCATAAGTTTACAGAGATTTATATTGCTCCCACTGCAGTCTATTTAGCTGTCACTGAAATCCCTCCTTCACACCCACACCCTAACTCTGTTAGAGCATTTCCTAAATTCGTTGTGGTTCTGCATAAGTAGATGCCACAATGTGGAGGGAGCTCCACTTTGGAAATGGAGGAATCTGCAAGCATATAGGGATTGGCTCTTCTCCCGTGTCCTCTCTAGGAAAGCTTCACTCTCAGCAGCCTTTGTTCCTCGTCCTCCAGCTCCTTCTTCTGCCTGCTTCCTGAGGAGTGGGGTCTGAGTTCCTCTGGGGCGTAAGGCACATTCAGACATCTGTAGAACAAGTGTGGGACTCAGTGGCACCCAGGCTCAATCCTGCTGCTGAGCAGAGGTGCTGGAGTGAGTCCTGCTCTGCAGCAGGAAAATAGGGAAAGGGGTGCAGAGAGGGCTGTGTTCTGAGTTCCCCAGGGACCTGTTCACCCCACGGATTCTGCCACCAGGATTGAGCTAGGACTGACCCGGCCCATGGTGTTACTCTATTTTAGAAAATGTGTGTGTTGGAGGGGTGGGGGCAGGAGATACAGCTTGTGGAAAGGAGTGCCACTCAACATCTTCAAGGGCAGGGATTCTGTTTTGGACTTTTCTGAGATTTTCTGGTAATGCCAATACAATGCCCGCTGCCAGAGATTTTAGAACTAGTCCTGAGAAGCAAGAACTCCCCTCACCCCCACCCTTTGGCCCAGACTCCTTCCAAGCCTTTCACACCTCCCCTGTGTCACAGCAGGAGAGTTTGTTCCAAAAGGGGAGTGTTGATGGTTCTCTTTTTGCTGAGATCAGCGGTAGAGGGAATAGACACTACAGTAGGAGAGTCATCGAACAGATCATTACTGAACACTTCCTCCTTGCTAATCACTGTTCCGTTCCGAGGTTGCCTCAGTGAACAACACAAAACCCTGCCCTAAAAGACTTGTTGAACGGCATCGTAGGTGAGAAGGGGGCCTGGCGAAGCCCTGCTCCCTACGGTTCTGTGAGTTCCTCCATGCCCACCCTCCAAAGTAGGTCCCCAGGGAGATCCCCTGAGAGTTGGGTGAAGGGACAGCCATGTGACCTGAAAACCCTTCCTACCTTGAACTGTGTTATCTCTGGGGTGTTTGCAGCAGAGGGAAGGGAGCCAAGGAAAGACTCTTGTTGCTGGCTTTGTCCTCTGGCTGGGCACAGGCAGGGGTGGCTGAGCCAGTCTTGTGCAATCCCTGAATTTATAAAGCAGAGGCCAGGCTGAGCTGGGCTGGGGGTGGGGGGTTGGGGGGGGTGGGGGGGTGGGTCTGCTTCTGGACTTGGAGCCAGGATCTGTTTGTAGCCTCCCCACTGCAGACGGGCAGCTGCATGACTCATGAGCTGAGGGGCCAGGCAGAAGCCATTCTCTTTGGTTCACAGGAATTCTGCTTGTTTATTTGTGTGTGTGTGAGTTCGTGTGTTTCCTTCTTCCCTTCTCCCCCTTCTCTAACTCTTCCTCCTCTGCAG
Seq C2 exon
GAGATCTGCCCAAGGAGAATCCATATGAGGATGTGGACTTAAAGAGCCGAAGAGCAGGACGAAAATCCCAGCAACTGTCTGAGAACTCCTTGGACTCTTTGCACAGGATGTGGAGTCCTCAGGACAGGAAGTACAACAGCCCGCCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444-ST5:NM_213618:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.994 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSP00000319678, ENSP00000350294, ENSP00000431564, ENSP00000431580, ENSP00000432521, ENSP00000432887, ENSP00000433528, ENSP00000433528f10447A, ENSP00000433793, ENSP00000433858, ENSP00000434701, ENSP00000435097, ENSP00000435292, ENSP00000436506, ENSP00000436760, ENSP00000436802, ENSP00000437006, ENSP00000437096
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)