HsaINT0159824 @ hg38
Intron Retention
Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:HGNC:11350]
Coordinates
chr11:8717741-8726209:-
Coord C1 exon
chr11:8726073-8726209
Coord A exon
chr11:8717893-8726072
Coord C2 exon
chr11:8717741-8717892
Length
8180 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
TAACTCTTCCTCCTCTGCAGGAG
3' ss Score
9.94
Exon sequences
Seq C1 exon
AAAATCCTTTGAGTTTGAGGATGCATCCAGTCTCCAGTCCCTGTACCCCTCTTCTCCCACTGAGAATGGTACTGAGAACCAACCCAAGTTTGGATCCAAAAGCACTTTAGAAGAAAATGCCTATGAAGATATTGTGG
Seq A exon
GTAAGCAATGGCAGAGGTGGCACCTGGGTCATCTCAGGGGGCTGCAGAAGAACAGGAACAGGAGGAGACACCTAGATTGACCTCCTTCACTGTGGGCAGGCATGGTCCCACCTTCTGGAACTCCTCCTGGAATGGGACATCAGGGGAAGCACCTTAGCTTAGACAGAGTGGCTTTGTGATTAAAAGCCTGGCTCTTGAATGAACTGAAATCCAAAGGACCTTTGGGGACACGAGAAGGAGAAAACAACATCATTCCTTTCCTTTATTTTTGGAAGGCTTTGAAGTCCAACAGGCCCTCTTCCTTAGCTGTGTGCCCTTAAGGCAAATCACTTAACTTTTGTGAAGACTCTGTTTTTCTCTTATAACATGATGATGTGACTATATTAACAACAACAATAATAGTAATAATATTTCGAGCCGGGCATGGTGGCTCGTGCCTGTAATTCCAGCACTTTGGGAGGCCGAGGCTGGTGGATCACCTAAGGTCAGGAGTTCGAGACCAGCCTCCATCTCTACTAAAAATACAAAAAATTAGCTGAGCATGGTGGCAGGCACCTGTAATCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCTGAGATCGTGCCATTGCACTCCTGCCTGGGCAACATGAGTGAAACTCCGTCTCAAAAAAAAAAAAAAAAGTAATATTTCATAAGGTTATTGTTAGAATTAAATAAGATTGAGTGTCTGGTGCAGGCCTGCTACCTGGTCAGAGATGGCCATCTTCTTTCTGTGTTCTTACATGGTGGAAGGGGCGGAGGGAGTTCTCTGGGGTCTCTTTTAAAAGGGCCCTAATTGGTGAAGGCCCTGCACTCATGACCTAATCACCTCCCAGAGGCCTCACCTGTGTTTCCACATAGGAATTTTGGGGGACAGAAACATTCAGTCTATTGTACAAGCTAACACATTTCATTGCCCCAGTTTCATGGTGCTGGCAGAAGACACGAGACCCCTGGGTCGCAAAGGACTTTATTACTTATGGCACAGTAGGCAGCATGAGCTTCGTGTTCACACGGGTTTCCCCTTGTGCCTAAGTCCCATGGGGCGGTGTGGAGAAGGCCCAGGTGGAAGCTGCACACACTGCAGGTCCATGTCCCAGCTGGGGAGCCCAAGCGTAGGAAACCCCAGTCTTTTCAGAGACTGCTGGCAAACCTGCCTAACCTTTGTCCTTGGAGGAGACATTATCTTTATCACTCTGGTCAGGAAACAAATCTGCCTCTGCCCTGAAGGGAGACACTATCTCTGTCTTCCAAGGCTGTTTGCTGTATAAATACCCTTTAAAATACAGTCTGGAACTGTCAGTTCCTCTTGTTCAGAAGAAGGGCAGAAATGCGAGACTCCATTGGGATTTGTCTTCCAACAGGTGGGAAGACATGGTATTGGCAAACTTGTGTTCACAGATCAGATGAAAGATAGAATGCTCTAGCCTGGGTTGCATTTGTTTTGTTTTTTGGCGTTCATTTCAATTCTATTAGCATCCTCATCAGTAAGGGGCTTTGATTCTGCCCAAGTGAAGTGTGCGTGTCAGTGTAGGTCAGTGAGGAGGAGAGAGGCTGTGTGCTGCCTGCTTGCTGGCTCCCTCTCTATGTCCCTGTCTTGCCTCTGTCTTGGGCCTTGAATCTGAAGAATGTGGTGTTAGTTAATACATGAGAGAGAGAAGTGGCCCAGGGTAGAGGGAAACCTCCAGATTATCAGAAGCCTGGAATCTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAAGCTCCGCATCCCGGGTTCATGCCATTCTTCTGCCTCAGCCTTCCCAGCAGCTGGGACTACAGGTGCCCGCCACCACACCTGGCTAATTTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGGCTTCATGATCCGCCTGCCTCGGTCTCCCAAAGTTCTGGGATTATAGGCGTGAGCCAGAAGCCTGGAATCTTATGAAGAGAGGGCCATCTGTTCCCTCATTTGATCTGAGCCATTGGTTTCACAGCCGTTTCCTTACCACTTGCTGGGCCATTGTTTCTGGGGAGACAGCAGCCATGCTGGGATGTGCAGGGACACTGCTTTCCCAGGAACAGAGCGTATAGTATGTAGCCATGCAAAACTGGGTCACAGCAGGAAGACTGTGGGAATGAGGTCCCTAGAACCGCAAAAGAGTTTGGGGAGGGAGGCCCTTTCCCTTACCACTGGGGAAAAGACAGCTTTGTACCTATAGGCCACCCAGAGCAGAGGTCAAGAGCTAGGGGCATCAGAACAAAAGATCCAGAAGCCAGGTGGGCAGTTAAGGAAGATGCCCCAACTGCAGCCCATACCCCAGTTCTACTCAGCCACCCAAGAGGCAGCCAGTGCTGTTCCTGTATTTCTCACCTCCTTATGCAAGACTAACATCCCAGAGTGGAAGAAAGTCCTCCCGAATGAGTGAGTAGGCAGAGGCCTAGACACACTTGCCCTCCTCTTTCCCTTCTCTCAAACCTGACCTAAGAAGGCCTGGGGAACAGCTGTGTTGCCCAGAACAGTTCTTCCAAAATTCTGCCCCCCAAACATTGCCCCAAAAAATCCTGAACAGAGCCCTGGATGGTGGAACTCTGGACAGAGAGAAATGGTTGAAGCCGTCCCTTTCTCAAATTATTTCAGTTCAGATGATCCAAGAACGTATCCCCACAGGAAATCCTTGTCAGATAATAGAGAATGGGAGGACCACAGGATTGCCAGCACCCAGCATAGTCAAGGGACATCAGAAAAACACAGCCCTCTCTGCCCACGGCAGCAGCCACACTGGGTGCTCCCAGGGTCCTGGGCAGCAAACTGACACATTGCAGTTTCTGCCAAACTAGAATGTACCCTGCAACAGGAGGTAGGGAGGGGGTGGGGCAACAGAGCTGCCTCCCCACTCATTAGGGAGGACTCTCTTCCACTCTGGGTGTTGCATGAGGAGTTAAAAAAAATATGGGAGCACCTTGGCTGCCTCTTGGGTGGCTGAGTACAGCTAGGGGTCAGCGCTGTGTGGGCAGAAGGTAGAGGTAGCTGCTCACCTGGCTTCTGGATCTTTGGAGCACTTAGAGAACAGGGAAAGAAGAGAGGGGGAGGATGCAGGAGAAAGGGAGGGGAGCGACCCAGGCACCAGTTTGGGAATATACTGCATCGGATGTTTAGGTTTTGCTTTGGCCTCGTGGGGTGGTGGGGGTGGTTTCCGGAGTCTGCAGTTAGGACAGTGCCCTGTGCGTGTTTTCCCTTTTTATGTCCCCATAGCAGCCCAATCTGAATTTCTGGGACCTGACTAGGGAGGCCAGAGGGAAATACAGAGGAAAATACTCTCTTTCTGTTAGATTCTGGTGGGTTTCCTTTTCCTTCCCTGGGGACAGGCCCGAGAGTTTGGAGCTCCCCACAAGGCTTCAGGGGGTGTCTTATTGCTGAACTCAGAATGGCAGTTTCCCGTCTTGCTTAGGACTGATCAGTGGCTCGGACTTCCTGGGAGCCGTCTCTCTGGTCTTGGCCCAGCCTGTGCTCTGTGGGGTGAAGGATGACTCTGACCCCGCTGGATCAGGCTCCTGCAGGCATGCAGGAATGGAGCTGTTGGGAGGCAGAGAGCCTAGTGCTCATCTCCATCTTGGGTCCTGGTGATTGGACTGGAGTCCTGTCTGTCATAGGTGGAGGGCCAGTTGGCCCCAAGACAAACATGTCTGTCTGTGAACAGTGGACTCGAATGGGGGTTGTGGAGGGTTTGCTGGCCTCCTGCCTACACTAGGCATGATGCCTGAGGAGCTGGGGTGGGGTACTCCCAAACATACTGAGGTTTACCTTGCTAACTTGCAGAAAAGGAGTTCGGAAAGAAAGTTACTGCCTTGCTGCTTCCAGGGCTGCTATTTCCCGCCTGTCCCATCTCACATCTGCCCCTGGAAGATGCTGCTATTCTACCAGGCCTTATGTTTGCATTCTGAGCCTGACACTTAAAAATGCACCCAAGGAAGCAGCTTGTTAAGGAATTATGTGGAGTGGCCTCGGCGCCTGAGCTGCATTCCTGCAGATTCCCACTCCCATCAGCTAGCCTGGGCTGAGGGAGCGTTTCCAGGAACTTCAGTGGGATGCAAGCCGGGGACCGGGCCAGTCAGCCTGGACTGCAAAGTCTTTTGAGCCTCCACTCTCTCTGGTTGCTTCCCTTATTTGCCCCCAGGCTGGGAAACAGTAAGGAGCAGAGGGCACCCACTGGGATGGAGGTTGCAGTGGGAAACAAAACAGCCAAGAGGTGCAGCCCAGGGAAGGTGCCGGGGCTGTCGAGAAATGGTGTCAAGGCTTGGAGGGTGGGCAACAGCCAGCCCCTTAGAGGCCCCAGTCTGATCTGTTGCCAGGGAGTTGGGCTCTTATCCTGGCCCTTTCTGTCCTGTGTGAGAGAGGGAAAAAGGCTGAGAACCAGGAGAAACAGCTGGTTGGAACCGGACGGAGGTTGTTGGGGAGGGAAGCTGCAGACCCAGGACCCTAGTAATGGGTGTGGTCCAGGAAGCTTAGGACTGTGTTTGGAGAAATTCTCAGTGCCTGTGCGTATACACACACCCCTTTCCTAACTGGTTTTTCCAGTTAGGTTGGGGCTGGGGGAGTGCTGTATGTGTGGTTAAGACCAAAGGAGTTATGGGGAGGAGTGAAAGGTTGTGGAGAGGAGTGGGAGGTTGTAGGGAGGAGTGGGAGGTTGTGGGGAGGAGTGGGAGCAGGGCCCAGAGGGGCTGGATTCTTCCTTTAAGAGGATTTGTGTGACACCTTTGGGCTCTGATAATCCCCTTTTAGAAGAGTGCAAAGCAGAAATTCTCGGTGATGCCTTTTGTCCCTTATTTCATCATCCAAGCTGGGAAAGGTTGAGACCTCTGGCTTCTCCAGCTGGGCTTGCTGAGGGCCAGGCCTTCAGGGAAGAGGGTCCACCTCTTCGTCCCTCTCCAAGGGTCATGTGGACTGTCCCAAGAAAGCTGTGTGGGCAGGAATGCAGGTAGAAATTTGCAGTCTGCCAGGCTCCCTGTCTCCCATTCATGCCCCTGCTGAATCTCCCATTCAGCCTTAGCTCCTTTAGCTCTGTCCTCCCTAGGATGTTCTGCACACCATTTCCCAGCCTACCGTCTCCTCCAACTCTGAGCCATTCCTTTGATACTTATTTGCTCTCAGCTGGTTCAGTTTAGTGGTCCAGGACTCAGGGTCCACTTGTCTCTGTACATCTCCATCCCCTGGTCCCCTGTCCACCTGGAGAGATGACTGGGAGAATCTATTTGAGACAGCTCCTCCGGGGCAGTCAGGAATGGTCCAGGAAGCTGAGAGATGAGTTAGGGCAGTGAAGGGACCAAGCTGAGGCTGGGGAGGCAGCGTGTGGGCTGCAGCCAGCCGTCTATTTGCTGGAGAACTGATTAGTGGCTTTGTTACATTAGACAGGATGTTAAACATTGCTGGAGAAGAGAGGCTGGCACAAGGGGCTGGGGAGGAGCAGGCCTTCCTGAAATTGAGTTTCCAGAGACAGGACCTATCTTGAGAACCTGATGTTGCTGGCTGTTTTCCCCTGGGTTGTCAGTGATGTGCACCAGGCTTGTACATCTATTACTTCCCTGGGCCTCAGTATCCTATGTCTTTTTCTTGGAGCTTTGGATTTTGTATCAATATTCAAAGCTCTTACTGTAGGGAAAAGAAGGAAGGAAGGAGGGAGTGAGGTGAAGGAGGGAAGGATGGAAAAAAAAGAGGGCTAGTCTTGGGACTCATGTCACACTCAGAAGCCATTGGAAGTTTAGAAAGCTCTATCTAAAGCAGTGGTTCTCAGTTGGGGGACAACTTCACTCTTCCCTCCCTCCATTCCTGCCTCCCTCCCTCTCTCTCCCTCCTTCCCTCTGTCCGTCCCAGAGAGCATCTGGCAGTGTCTGGAGACATTTTTGGCTGTTATAGCTAAGGAGATGCTAATGTCTCCTGGTGGATAGAAGCCAAGGTTGCCACTAAACATCCTAAAAATGGACAGGACAGTCTACCACAACAAGAATTATTCAACCCCAAATGTCAGTGGCTTGGAGAAACCCCTGGGATTGGGACAAGGCTTCCTATAGGTTGGGGATGACAATAAAGGCCCTGGCTGATCATGCAGTCCAAGGCAGTTTCGATTTGTTGAGCTTGGCATAAATGTTCTCCCTGCCGTGATGTGGACAGTGATGCTCTGGTCCTGTTTTAGGGGATCAGAAGACTGTGTCCTGGCATTCTCCCTTCTTAGTTCCCCCACCTCCTCACTCCTGCAGGGCATATGTTGGGGAAGGATCAAGAAGTAGAGAATCCATCCCCAACACCTCCCTAAGTGCCCCACAGTGGGGTAGGCTGGAGAAAACATGCAGGGGGTGCCGGGTTTGCTATTTGGCTTCTTGCGACAGGGCTGCTGGGCCAGCTCCGCTTAGTCAGGGCTCTGGAATGGAGACAAGTCATTTTAATAGCATGACTGTGTTACAGGAAAAGGTCTGTTCCATTGCTGGGGACTCTGCTTGGAGTTGGGAATCACTTAATCCAGTCCCAAATCCCAGTGACCCATCTTTGACTCATAAGTTTACAGAGATTTATATTGCTCCCACTGCAGTCTATTTAGCTGTCACTGAAATCCCTCCTTCACACCCACACCCTAACTCTGTTAGAGCATTTCCTAAATTCGTTGTGGTTCTGCATAAGTAGATGCCACAATGTGGAGGGAGCTCCACTTTGGAAATGGAGGAATCTGCAAGCATATAGGGATTGGCTCTTCTCCCGTGTCCTCTCTAGGAAAGCTTCACTCTCAGCAGCCTTTGTTCCTCGTCCTCCAGCTCCTTCTTCTGCCTGCTTCCTGAGGAGTGGGGTCTGAGTTCCTCTGGGGCGTAAGGCACATTCAGACATCTGTAGAACAAGTGTGGGACTCAGTGGCACCCAGGCTCAATCCTGCTGCTGAGCAGAGGTGCTGGAGTGAGTCCTGCTCTGCAGCAGGAAAATAGGGAAAGGGGTGCAGAGAGGGCTGTGTTCTGAGTTCCCCAGGGACCTGTTCACCCCACGGATTCTGCCACCAGGATTGAGCTAGGACTGACCCGGCCCATGGTGTTACTCTATTTTAGAAAATGTGTGTGTTGGAGGGGTGGGGGCAGGAGATACAGCTTGTGGAAAGGAGTGCCACTCAACATCTTCAAGGGCAGGGATTCTGTTTTGGACTTTTCTGAGATTTTCTGGTAATGCCAATACAATGCCCGCTGCCAGAGATTTTAGAACTAGTCCTGAGAAGCAAGAACTCCCCTCACCCCCACCCTTTGGCCCAGACTCCTTCCAAGCCTTTCACACCTCCCCTGTGTCACAGCAGGAGAGTTTGTTCCAAAAGGGGAGTGTTGATGGTTCTCTTTTTGCTGAGATCAGCGGTAGAGGGAATAGACACTACAGTAGGAGAGTCATCGAACAGATCATTACTGAACACTTCCTCCTTGCTAATCACTGTTCCGTTCCGAGGTTGCCTCAGTGAACAACACAAAACCCTGCCCTAAAAGACTTGTTGAACGGCATCGTAGGTGAGAAGGGGGCCTGGCGAAGCCCTGCTCCCTACGGTTCTGTGAGTTCCTCCATGCCCACCCTCCAAAGTAGGTCCCCAGGGAGATCCCCTGAGAGTTGGGTGAAGGGACAGCCATGTGACCTGAAAACCCTTCCTACCTTGAACTGTGTTATCTCTGGGGTGTTTGCAGCAGAGGGAAGGGAGCCAAGGAAAGACTCTTGTTGCTGGCTTTGTCCTCTGGCTGGGCACAGGCAGGGGTGGCTGAGCCAGTCTTGTGCAATCCCTGAATTTATAAAGCAGAGGCCAGGCTGAGCTGGGCTGGGGGTGGGGGGTTGGGGGGGGTGGGGGGGTGGGTCTGCTTCTGGACTTGGAGCCAGGATCTGTTTGTAGCCTCCCCACTGCAGACGGGCAGCTGCATGACTCATGAGCTGAGGGGCCAGGCAGAAGCCATTCTCTTTGGTTCACAGGAATTCTGCTTGTTTATTTGTGTGTGTGTGAGTTCGTGTGTTTCCTTCTTCCCTTCTCCCCCTTCTCTAACTCTTCCTCCTCTGCAG
Seq C2 exon
GAGATCTGCCCAAGGAGAATCCATATGAGGATGTGGACTTAAAGAGCCGAAGAGCAGGACGAAAATCCCAGCAACTGTCTGAGAACTCCTTGGACTCTTTGCACAGGATGTGGAGTCCTCAGGACAGGAAGTACAACAGCCCGCCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444:ENST00000534127:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.981 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains