BtaINT0141662 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005356 | ST5
Description
Bos taurus suppression of tumorigenicity 5 (ST5), mRNA. [Source:RefSeq mRNA;Acc:NM_001098093]
Coordinates
chr15:44441688-44443051:+
Coord C1 exon
chr15:44441688-44441872
Coord A exon
chr15:44441873-44442941
Coord C2 exon
chr15:44442942-44443051
Length
1069 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGA
5' ss Score
7.16
3' ss Seq
CATATCCCTCTTCCTTGCAGCTG
3' ss Score
10.93
Exon sequences
Seq C1 exon
CCCACACACAGCGCCTGGTCCACATCCAGTCCATGCTGAAGCGCGCGCCCAGCTACCGGACCCTGGAGCTAGAGCTGCTGGAGTGGCAGGAGCGGGAGCTGTTCGAGTACTTCGTGGTCGTGTCCCTCAAGAAGAAGCCCTCCCGGAACACCTACCTCCCCGAGGTCTCCTACCAGTTCCCCAAG
Seq A exon
GTGCGACCCCTCCCTCCTTCCTGGCCTCTGCCTTTCCGCCTGGCCCATCCTGTTCCTGCCATAGCGACCCACCTCACTGCCCCAGCCCTGAGTGTGGCTCCCTGGAGCCAGGAGAAGTGGTGGGTTTGGGCCAGTGAGTATTCAGAGGATGAAGGCGGAGAGAGCAGCCCCCAGTGTGGCTAAAATCAGATCCACGTTGTGTACAGGACTTCGAGGGTCCTGAGGAAGGGCCCCCAGCTACTACTTCTATCTTTCTTCTCTTTTTGAACCACTTGATTGAGATACAATTTAATCTATTAAATTAAAGAGATACTATTTAATTCACCTGTTTAAAGCATACCATTCAATAACTTTTCATATATTCACAGTTATCTGACCAATTTTAGAACATTTTCATTACTCCCCAAAGAAACCCTGTACCCATCAGCATTCTCTCCCCTTTCCCCCACCTCCCTGAGCTCTTACCACTCCTTCCCTGCTTATCCCCAGCCAGCCCAGCTGCCTGGCCTCCTTTCACTTCCTGTAACACTCAAGCCCTTTGTCTCTGTCATTGCCCAGAATCTTCTTTTTTCCAGCTCTTCATTTGGCTACTGGCTCTTTCTCATTCTCTGCTCAAACAGTACCTCCTCCAGATCTTTCTAGATACTCTAAAGTAGCCCCCTCCGCCCAGTTCTCTCTGTTGTATCACCCTGTTTATTTCCTCTGTGGCCCCTCTGAGACTGTGTTGTTGATTACTTCACTCTGTTGGCCAGCACGCGCATAGGACAGGGACACCATCTGCTTTGTGGTCTCTTTCTTGGTAGTCCAGCAATGGCACAGTGCCAGGCGCCACATATAAAGTGCTGCTTTGGCATATATTGAATGAATGAATGAATGATGACTCATCCCACACCCAGACCTTTCTGTGAGAATTGTGAGTGGGGTCAAGGCTGCTGAGAAGCACGCCAGTTGGTAGAACGCCACCTAGGACTCACGAGGCTGGGGATGGGGTATTTCTCAGCTACCCCCACGACCCCCAGCTTTCATGTCTTCTCTGATCTGTTTCTCCCCATATCCCTCTTCCTTGCAG
Seq C2 exon
CTGGACCGACCCACCAAGCAGATGCGGGAGGCAGAGGAGAGGCTCAAGGCCATTCCCCAGTTTTGCTTCCCTGATGCCAAGGACTGGCTCCCTGTGTCAGAGTACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005356:ENSBTAT00000007048:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.081
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(12.9=14.5)
A:
NA
C2:
PF0345613=uDENN=FE(51.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACACACAGCGCCTGGT
R:
CTGCTGTACTCTGACACAGGG
Band lengths:
294-1363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development