MmuINT0153213 @ mm10
Intron Retention
Gene
ENSMUSG00000031024 | St5
Description
suppression of tumorigenicity 5 [Source:MGI Symbol;Acc:MGI:108517]
Coordinates
chr7:109538934-109539846:-
Coord C1 exon
chr7:109539662-109539846
Coord A exon
chr7:109539044-109539661
Coord C2 exon
chr7:109538934-109539043
Length
618 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCATATCCTCTTCCTGGCAGCTG
3' ss Score
8.97
Exon sequences
Seq C1 exon
CCCACACCCAGCGCTTGGTCCACATCCAGTCGATGCTGAAGCGAGCGCCCAGCTATCGGACGCTGGAGCTGGAGCTGCTCGAGTGGCAGGAGCGGGAGCTTTTTGAGTACTTTGTGGTTGTGTCCCTCAAGAAGAAGCCATCTCGGAACACCTACCTCCCTGAAGTCTCCTATCAGTTTCCCAAG
Seq A exon
GTGAGTGTGCCATCCCCAGATGCGCCTCTGCCACGCCCTAGGTCGTGTGCTCCTCCACACTTTATTGGTAGATGATTCACTCATTCAGGTTAACAGTTCAGTGTCCTTCAGTGTGTTTTCAGAGTCACACAGTCACCACTCTACTTCATTTTAAAACATCATCTCACCTAAAGAAATCCCCCTACTCACTAGCAGGCAGTCCCTGCCCACGACCTTGTGTCTTAGCACCCCTCAGCTCAGCAGCCAGTCTGGCTTCCACAGGTAGCTCTGCCCTTGCTTGTCTATATTGTTCTCTCTCCTGCTGTTTTCCTGGCTGCTGGCTTCCTCACATTTCGAGGAGCAGAAGTGAGCCTGTCTGAGGTCTCCTCAGAAGCCTAGTGCGGCTTCCCACTTTCACACGTCTCTTTCTCTTCACCCTGCTTGTCTCGTGTGAGGCACCCTTTGAAGTGCTGGTTACTCCATCTGCCTGACCAGAATGCAGGGTCAGGGGTAGATCTTGTCCATTTTGTGTCATCCACAGCCCCAGCACAGGAGGAGATGCCTTTCAGTCCCTCTACCCCTACTGCCCCAGGCTCCTTGTCATCTCAGTTACCTATCCTCATATCCTCTTCCTGGCAG
Seq C2 exon
CTGGACCGTCCCACCAAACAGATGCGGGAGGCAGAAGAAAGGCTCAAAGCTATCCCCCAGTTTTGCTTTCCGGATGCCAAGGACTGGCTCCCTGTGTCAGAATACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031024:ENSMUST00000077909:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(12.9=14.5)
A:
NA
C2:
PF0345613=uDENN=FE(51.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACACCCAGCGCTTGGT
R:
CTGCTGTATTCTGACACAGGGA
Band lengths:
294-912
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types