DreINT0156563 @ danRer10
Intron Retention
Gene
ENSDARG00000037363 | st5
Description
suppression of tumorigenicity 5 [Source:ZFIN;Acc:ZDB-GENE-030131-2547]
Coordinates
chr7:28223901-28227470:-
Coord C1 exon
chr7:28227286-28227470
Coord A exon
chr7:28224011-28227285
Coord C2 exon
chr7:28223901-28224010
Length
3275 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
TTTTCATCTGACCCCCACAGCTA
3' ss Score
8
Exon sequences
Seq C1 exon
CACACACTCAGAGGTTGCTGAAGCTGCAGTCTATCCTGCGACGCGCACCCAGTTACAGGACGCTGGAGCTGCAGTTGATTGAGTGGCAGGAAAGGGAGCTTTTTGAATACTTTGTGGTGGTCTCGCTGAAGAAAAAGCCCACCAAAAACTCTTACGCTCCAGAAGTTACCTACCAGTTTCCCAAG
Seq A exon
GTGAATATTCCCTGTAAAAAAACAAAGAGATGCTGATTGTGTTTTAGATTTAAGATGATCTGCACAACATCTAATGTCTACCGACATTAATTCAATTCAAGTTTGTTTGTTTGTTTAACGCTTTTTACAATAATTATTGTTTCAAAGCAGCTTTACAAAAGGTGCACATAATTGCAATACATTTAAATTAAGTAAAAGTTACATTCAAGCATAAGTTATTAAATACAGACATAGTTAACCTGCAGTTTTATAGCATAAAGGTGTCTGTGTATATGAAGTGTATTAAGTGTATGTGTCGTGCGTAAAGTCTTCCGACGGTTAGCTTCATTTCTTCATATGTGTTGTCCTTGAAGATTTAATTTTATTAATTATATAAGATTTTTATGTTTAGCTGAAGGTTTCAGAGTTAATAGTCTTATTAAACATCTTTTATGCTTAATTCTCACATATTAGATAAAGTTTTGATGTATGATTGTGAATAATATTTATTAAATTCTAAATGTTTTTCATATCGAGTGTTTTTTTTCTATTATTGTGGTGCTCAACAGTTTTAGAACAGTAAGCTATTAAATGTTTTTTTTTTTTTTTTATAAAAGTCTCTTATGCTCACAAAGCCTGTGTTTATTTGATCCAAAGTACACCAAACAGTACAGTTTTTGTATTTAGTTCTTGAGCACTAAATAAGCATATTGGATTTTTTAAAGGAGCATGTGGAGCCATAACTGAAGTAGAGGTTTGCCAATACTGGAATAAATTACTTTGTAAATTTGTGATAAAAAAAAATCTTATTGAACCAAAACTTATCAATGGTTAAATATGTACTTTATATCTTTGTGTGCAATAGGGTATATGCAGAAGGACTTTTAAGTTTTCATTAACTTGGGTCAAACACTTCCGGTGAAGTGTATGCTGTCACAAAATCACTGGCTGCGTCCGAAACCGCCTTCTACTTAGTAGGTACTGCATTTGAATTTAAACGTACTACTTGGCCATTAAAAAAGTACGTTCTATACAGTATGAATGTGAAAAGTATGAATGGAATTCAGACGTACTACATCTGCCATTTTGTCATGGTCATGTGACCTACTTGCGTCAGTTGCGTCGCCTCATTTCCATTCATAAATTCTCTCGCGGGGCATTATGGGATATTGCAGCCTGCATGGGATGTGCACTCTAGAATCTCGCCGGAAGTAGTAAGTCATCCTGGTACTTCTCGCGTACTGCTTTTCGAATTCTATGAATTCGGACATACTACTCGGCTCGCATACTGATTTTAGCATACTTTATAGTATGGAAGTATGCGTTTTCGGACGCAGCCACTGTGTTTAAGGTCTGTTTTTATTCAAAATCAGCAATCTCCACTGCCTGATTGATATACGTTATAATATATACAAGAAGCACTACATTAAATTATGCATTTCTGTGCCATGTCTTTGAAATATGAAAATTGATTTTATCCCAGTATTTTCAATGGTGTGTCTGTGCTTGCTTGCTAATCCTGACAGCGCGTTTGTGTAAAAGTTTTTTTTTTCTTGTTTTACGCTTGAACAACTAAATGAATGGTGAGGTCTATTTAACTTATTGTATTTTAATTACATTAAAAATTATTTTTAATTACAACTTCAGTGCTGTTAAAGGAACCATTTAAAAATTGATAAAAGTCACATTCGTTAAAACCGTTTACATGAAGTTTATTGGTATGGAAAGAAACACTAGCTGTGCATAGCTCTAGCTGTGCATAGCCCTATTATGCATTAGCGGCCCAATATACTTGAATAAAAAAGTTATTATTATTTTTTAAGAAGATGTTTAAGAAGTTTACAGAGCAGTGATATATTGTTAGAGAACATCCTAAAGCTGTCTACATGGTAGCGAGCAGCATTTTGATCAACATGGTTTTGTACATTTACCCTTTATCAGGTAAATAATCATAAATAACATGTTTTTTTTTTATTGCAGAGAGATACAATTCACAGCATCAGTAGACATGACATTTTTTCAGCTTTTCCTGTTTAAATTTCCCCATCAGAGGAAACACACATTTCTTCATGACAGCAACAGAATAACATATGCCTTTGCCTTATTTTACATCATCCTTATTAAAACTATAAACAAAAGAAAGAAAAGGGGGGGAGGGGGTAAAAACAATATTAACAGTAAAAATAAATCTTAAAAGTCTATAGAAAAAACACATTAGGTTGAATGAAAGTACTCAATCAATGTATACCACAAGTCAACAAATGTATCTTTTCCGTTATGCACACTGTGTGTAATTTTCTCTTTAATGAATATATTTTTCAAAACATTAAATCAAATCTAGAAATGGCTTTTTTACTTGAAGCAAAGATGACTCTATGCATATATTTGTTTTTTTCTTTCTAAGAAAATCATTGACAGCATACCCATGTAAAGAACCTCAAAGCTGAAATCAATTGAAGTATTTAGGATATTCTCTTAAATGCTATGTATCCCTTTCCAAAAAAACTTCTAATATTAGGACATCCCCAAAATATGTGAAAAAGATTAGCGTCCTGTGATATGCAATGCCTCCAACATTATGAGCTCCCATGAAACGGCACTTTCTGTTTTAGAGTAAGGAAAAAAATGCTTAATATTTCTACAATATAATTTTTTAATAAAAAGGCTTTGTAATAACTCCCATGAACACTTCAGGTTTTTTTTTTCAATGAGTATTTCAATGAGTGCTCTATAAAGGGTTAAAAAAGGTGGAGCCGCAAAGCCAAACTTCATTTGTAAGTAGTACCATGTACTTTACCAGCTTGTTTACCAGCCTGAGCAAACTTTTCTGACAAGCTGTTTCGGACTTCTAAGATGAACTCCAAATGAACTTGGTTTTGGCCTGTTTTTGTTTAAATAGTCACACCGTTTCCTTGAAGTATATCTCAAAATAAAGACGCTTTGAGCTCTTATCATTGGAATATATTGACAGTAAGTGGCATAAGCAGGAAACCGTTGCCATAGCAATCCTGTTTAGTTACCGAGATAGGTCTTTAATTAGCTGAGATCTGCTTCAGTGATTGTGTTCCCTAGAGAGGCTGAAATATGTTGACACGACAGAGGGTCAACATGTCATTGAGCTTCTAAACTAGAACAGAGGGCATATGCTGACATAGTAGGTGGTGGGGGATTGACCCATTGTGGGGTGAATGAATATTCTGTACATACTTGTCATAGTAGTGGAGGGACACTGTAAAGATGTTGTGCAAAAGTCTGAGATGGATTTCTTACTAGGCCTTTTCATCTGACCCCCACAG
Seq C2 exon
CTAGAGAGACTCACCAAGCAGATGAGGGAAGCTGAACAGAGACTCAAGGCTATTCCACAGTTCTGCTTCCCAGATGCCAAAGACTGGAGCCCTGTGTCTGAATACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037363:ENSDART00000133050:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(12.9=14.5)
A:
NA
C2:
PF0345613=uDENN=FE(51.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]