BtaINT0141696 @ bosTau6
Intron Retention
Gene
ENSBTAG00000044129 | ST6GALNAC6
Description
Bos taurus ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 (ST6GALNAC6), mRNA. [Source:RefSeq mRNA;Acc:NM_001001151]
Coordinates
chr11:98568364-98569711:-
Coord C1 exon
chr11:98569604-98569711
Coord A exon
chr11:98568811-98569603
Coord C2 exon
chr11:98568364-98568810
Length
793 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCCCTCTGCTCTGCCGCAGCCT
3' ss Score
8.96
Exon sequences
Seq C1 exon
GGAAAAGTCCCACTCGTGGTTGAGCACAGGCTGGTTCACCATGGTGATTGCAGTGGAGTTGTGTGACCATGTGCACGTCTATGGCATGGTGCCCCCCGACTACTGCAG
Seq A exon
GTGAGCACTCCCAGGGCGATGTCCAGCTGTTGGCCTCAGGATGGAGCAGGGGTCCTGGAGACCTTGGCTGGGATGCCTTTGAGGGCCTCTATTTTACAGTATTCAAACTGCTCTGCAGAGATCTAGGCTCTTCAGAGCTACCTCAGGGGCTTCCATCCCAAGCTCAGCCGGAGTCCAGAGTTTATATATTAATAACTATTTTTATTATTACTATATGAAAAGCCCAGTAGGTGACAGCTGTTTTTTTACTAAGTGCTGACAGTGTACCAAACATGGTTTTTTATTATTTCATTTACTCCTTATAGTGACCGTAAGGGATAAGAGGAGGATGTTTTGTGAAAGGCCTCAGTTCCCATGAACAGTAAGGGGTAGGGGTCAGGCTTCAGAGCCCATGGTCCTTACCACTATCCCACATTGCCACCCTCTGGGGAAAATGAAAAGTTTCCACTGCATTAAAAAAAATAAAAATTTGAGGACTTCCCTGGTGGCTCAGTAGTAAAGAATCAGCCTTGCAATGCAGGGCACATGGGGTTCACTCCCTGGTCCAGGAAGAGTCCACATAAGCTCTTTTGCCACAACTAAGACCTGATGTGGCCAAATAGATTAAAAAAAAAAAAAGTTTGAGAGTCAGACACCTAGTCTACACTATACCCATTTCACAGATGGGAAACTGAGGCCCAGGGAGGGGGCGGGGATTTCCCCCACTGAGGCGCTACAGCAGGTCAGGGGCTGGGAAGGGTAGGATCCCGCCAGTGCCTCCCTTGCCCTTACGGCCCCCTCTGCTCTGCCGCAG
Seq C2 exon
CCTGCGGCCCCACCTGCAGCGTATGCCCTACCACTACTATGAGCCCAAGGGGCCAGACGAATGTGTCACCTACATCCAGAACGAGAACAGCCGCAAGGGCAACCACCACCGCTTCATCACGGAGAAGAGGGTCTTCTCATCCTGGGCCCAGCTGTACGGAATCACCTTCTCCCACCCCTCCTGGACCTAGGCCACCCTGCCTGTGGGGCTCTCACGAGGGACACGGGAGAAGTGGCTCTCCGCCCAGCTGCTCGACCCGGGGCCGTCTCCTGGCCAATCAAGGCTGGTCAGGGTGTCTTCTGGAGGGTCAGGCCTTGAAGCAGGCGCAGCCTCCAGCCATCCAGGGCCTGGAGGAATCTCTTGGCCAATCAAGGATTTGGGCTTCTGTGTGGTTAATCGGGTGTTGAGGGTATTTTTTTGTTCAGTCAGGGTCTGAGCATAGTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044129:ENSBTAT00000061027:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.063
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(13.4=100)
A:
NA
C2:
PF0077713=Glyco_transf_29=PD(21.6=90.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGCACGTCTATGGCATGG
R:
TCCAGAAGACACCCTGACCAG
Band lengths:
344-1137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development