GgaINT0038985 @ galGal3
Intron Retention
Gene
ENSGALG00000009021 | Q6ZXY4_CHICK
Description
NA
Coordinates
chr8:19957352-19965301:-
Coord C1 exon
chr8:19965194-19965301
Coord A exon
chr8:19957908-19965193
Coord C2 exon
chr8:19957352-19957907
Length
7286 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
ATTTTTTTTTTCTCCCGCAGGGA
3' ss Score
13.19
Exon sequences
Seq C1 exon
GAAGATATCCAACACTTGGCTTAGCACGGGCTGGTTCACAATGACTATCGCCTTAGAGCTGTGTGACAGGATAAATGTTTATGGCATGGTGCCACCGGATTTCTGCAG
Seq A exon
GTAGGATTTATTTTGAAACCATTATTAGCCAACGAGGTTGAACATTACAGATAAATATCTGAATCTTGAATTTTCTCTCTGAAACGTCTTCCATCCTCTTAAAGCAATTAATTAACATGTCCCAAGATCTGATTCTGAAAGCAACAAACAGCATTTAATTATGTCATATAAAATATTAAAAATTTTTGTTTGTAGTGTGGGAGAATTAATCTATGTTGTTGGTTTCTTTTAGTCCCTGAATATTTATCAGCTAAAAGTAATGCAGTAATTGGCATGAAATTAATCTGAAAAGAAGGAAGCACTGGAAAATGTTACTTTGAATTTGTTTTTAAAGGTTGCCCCCACGATTAATAGAGAAAAGCAGTTCTTTCAGTGACTAGCTTCTAAATTAACTTCCTATGCAACTGAATATAGTACTGCTGTCACATAAATACCAGTATTCCAGTAAACTGGTTTCCTAAATAACCTACATAATCCCCACCAAGAACCCCACAATATTTGGATGTGCAGACTAGTTACAGTCAGTCCTGTATTCACCCACTTTGGTCCTGCAGGGCGTGGGGTACACGTGGAAGAAACAGCACACAAATTCTCTCAGTGGAAGCTGCGTGACGTATTGATGTTGGTTCATAAAATAACAGCTTGGGTCCATTTCACAGCTCTGTGATGCCCCAGTGCTATACAGGCCTCAGACCTGAGGTGTTGGTTAGGGTTTCCTGTGGTGGACCCATGGTACTGGGAAACTGACTTCAAGGCTTACAGTTGTGGTATAAACTCTTGCAAATGTGTTTTACATCAGCGGTCTTTTTATGCTGTTAAGCACCATCGGTCTGCCCGTAGCCCCACTTTGCACTCAGACATTCTGAAAACCGTGCTTACGTGGGCACACCTCGTCCTGATCCATTTGCACTGCCAGGTGATCCAGTGATGCACAGAGCTGGTATGCACAGTACGAAATGTTTCATTCCCTGCTCCTGAATCCCTCTCACTAAGAGCAACTTGCCTGAATTTTCTGTTGCAAATTTAGTGATCTGACTGAAGTCTGCTTCCTTGGCCAATACAAGATACATTTCAGGGGCATGGGGAGCAACGCTGCAGTGACAGGTTAGCTCATCTGTCACAGAGAATAGGACTGCTTTGACTTTCTTGTGAGCACTAAAAAGGATCATTCAAAAATCTGCATTTATCCTGGGCACAAAACAGTAAGAATCCCTGAAGAAATTACAGTATAAAATGTCAACATTAAATCCCACTTTGTGAGAATTTTTTACAAATTATAACAAAACTCCAATGATAAATGCTGTGATGTACTGCCAGATTTCATCATGAATTCTCCAAGGAAAACAACAAACTAGATCAGATATTTCAGGCAACATAAATACCTTCCCTAGCACAGCATCTCGTTCCCTTGTCATTTCAGTTGGCAAAGACGCATTTCTTCAGTTCCTGTTCTGAAACGGTTATGTCCCTGTCATCACTGTAAGTGGCTGGTCTGTCTTTCTCATCTAAAAATCCAGTGGAGAGGGGCAGGCTTCGGGGTACTGATGGACAGGAAGCTGGACATGAGCCAGCAGTGTGCTCCTGCAGCCCAGAAGGCCAGCTGTACCCTGGGCTGCATCAACTGAGGGGGGGCAGCAGGGAAAGAGAAGGGACTGCCCCCCTCTGCTCTGCCCTTGTGAGGCCCCATCTGGATCACCGTGTCCAGCCTGGGGCCCCCAGCACAGGAGGAAAGCAGACTGTTGGAGCAGGTCCAGAGGAGGCCACAAAGAAACTCAGAGGCCTGGAGCATCTCTCTTGCGAAGAAAGGTTGAGGGAGATGGGCTTGTTCAGCTTGGAGAAGAGGAGGCTCAAGGGAGACCTCGCTGTGGCCTTCCAGTGCTTGAAGGGAGCATACAAGCAGGTGGGAGACAGACTTTTTACACAGTCCGATAGAGACAGAACAAGAGCGAATAGCATTAAAGTAAAAGAGGGGGGATTTAGGTCAGATGTTAGAAAGAAAATCTTTACTCAGAGGGCAGTGAAGCCCTGGCACAGCTGCTCAGAGAGCTGCGGGTGCCCCATCCCTGGAGATGCGGGGGGGAGGCATCCAGAGGAGAATCCAGCAGGTTGGAACTGGATGATCTCTAACGTCCCTTCCAACCTCAGTCATTCTATGATTATATGAAATGCAGAAGATAGCAATGCTCAATCCTAATTTTTCAGGCCAGGTTCCTTGTCAAAGTCAGATAAGCTTATGTACGTATATTTACAACAAACAAAAAACCCCCCACAAAATTAGCAAAAAACATACAAAAATATTGAGAGGGTATAATGGTAACTGAGACCATATGAAAGGCTTTCACAGAAATGACAGACTGAAATCAAATGGATATAATATTAAATTATAACACACAAAAAAAAAGCTATCATAAATCCTGCTGTCAGTAAATGTAATAATGCTTACAGCTTGGACAACAAAGATGCACTTATCTGGCCATAGAAGTGGAAGAAGGTCATTTCTTAACCAAAACAATATAAAATGTCTTTTAAGGTATATTTAACAAACTATGAAGGGGAAAAGTGTAGTTCCATTCCTACCAGAAGCTAGCCATTGGGACCTGTGAAATGGACCGGCTGCCATAAATGAAGTCAAACTTACTTTGCTCTTCAGCCACTCATTAATTTAAACAGTGCATCCTTTCAGAGAAATAAGAGAACAAAATAGAAAATTGTAAAACAAAGAAACGTGCTGTAAACAGATGTAATTTAAGGCCGATTTCTCTGGCTTCCAGTCGGATAAAAAACAAAACTACCATTTCACAGAACTAAGAGAAACGAACACAACCCACCCTACCTCTCGTGTCTGCATGAGGTGCTACAGGTGTAAGTGTATTTTACTTGCTGTGCAACCAGGGGTTCATTAAGATTAAAAAAATATATATATTCTTAATACTAGTCAAATTGAATATCACCAAATGTACAACTCCAGCAGATACTCATTATTTGTTAAGTATTAATCTGTGGAGTAAGTAATGAGTGTGGGTGATCACTGTCATGGAACTAAATTAGTATCGCAGCCGTAACATGAAGGACACCTCAAAGGTATCACGAACATTATACAGTTGATTCTGCCACAAATTATTAGCTTAAGATCATTAACCAAATTGCTTCCTACCCATGCAGGAAAAATAGTCCAGTGAAGCAGTCTGCACTACTGACTAAAAAGATTTGCTACTATTAATTGCAACAACATGTTTCAGATTCATTTCTATTTACTTTCACTGGACATTGATTTTAGAGTTTAACTGGAATTGGCGACCTGATTATTACAAATTTGTGGTAGCACAGAGCAAAGCTATATGTAATACCAAATGCCTTTTGCTTGGCTTCAGATCTCTGCTGCGCTAAGGGTTAATGGCTTTGATATTGCTTTCATGCTGTTAGATACGTCTGTCTTGCACATTCTGGAATAAGATGAAAGCCTGTGCTTGCATGCACGTTACAGAGCTTTTTGGAGAGAGCGTGCATCTCTCCCTTTCCTCTCACAAAACAAGTCATCTTGCTGTATTTGTTAGTCCAGGGATCCAGTCCCAGCCTAGCAAACTGGCAGCCCAGGTAGGAAGCACTGCCCTCTCTGAGCAGCCTTAAGCAGTCTGCCATGCGCACACGCAAGGACTCACTTCTGCCTAGGATGGAAATCAAGGATTTTCCTCTTGCTTCCCCACACCAGCAGCCAGATTGCAGTGTGCAGACAGCACCACAACTCCTGCAGGAGCTGCGGTGCTGCTGCTTTTCTTTGTGGCTGCTCAGCAGCATCTGCAAAGGACAGAGACAAAGCTTAATGCAGTTCGTAGTAAGACCAGTTCCTGTCTGTTGGATTCTCTGCGGCGGTGCAAGGTTGGTTTCTTACAGGTATCTCTGGGTTCTCACACATGCAAGGAAAATTCGAGGTGTTGAAGAGATCCCTTTAACTTCCCCCTTCTTCTTTTCCTCCCTCCCCCCCTTTCATGGGCATTCTGGAACTCAAAGAAACTTAAAGCTTAATTCTGAGCCTTATTTTAACTGATATGAATAATTTTTGCTCCAATTATGGAGTCAGATCATTTTCCTATGAAGAATCCTCATTTGACTGCCAGGCCATTTCCCATCTGCGATAATTTGCCTGAAAATTGGCATTTGAAATCCTTTAATTTATTCCTTTGGGCACCGCTTTTAAATCTAGTGGTTTTTTTTTACCTCCTCTCTCCACTTTCAGTTGCTTTAAATCAACTGCAAAGAAGCAGTTGTTGCTGCTTACATTTGCTGGGGTGTACGGAGGACTCGATGCACGTAGATGATTATATAAACTGCATGGGAGATAGCTATGCCCTTTAGTTCCTTATACCCAAACCTCACTTCATTACCTTACTAACTTAATAACAGAATGCTTAGATGGTTTGGAAAACTGTGCTAGAATGCATGCCAAGGAAATGAGCTCCTGGGAATAGAAGGCAAAAAAAACCATCCAGAAAACTTAAGAGTCCTGGTGCAGCACGTTGCCCATCACTCAGCATGTTGCCCATCACTCAGCATGTTAATTACATTTTATTCACCCTTCAAAGTATGAATTATTTGACGAAGCAAGTCAAGCACCTGTAGTTTCAGTGGGTTGCTTTATAACAGCCCTGTTTGTAAAGGGAGAGGTTGACCAGAAGATGGGATGGGATGGCCGTGTTTTTCTGTCTCGTTTCCTTTGAGGCAAACACTGCTTGCTGTATTTTCAGCTTTCGCTGTGGGTGGATACCATCTGTGGGAAAATGTGCACTGAAGTGGCAAACAGTGGATGAGTGACATTGGGTACAAGCAGTTACGCTGTTGCTGCGCTGGCAGGCGATTAGGCAGGAAGTAGAGTATATTTTACAAAGGATCTTCCCTAGATTCCTTCCAGCTGTGATATTAATATGCATGCGAAGCCTGACAAAATACTGATTAATGTCCAGTATCAGTCAGTGATAAAACAGCATCTGTTTTAATGTTAATAAATGAGGTGGCAAGCAATTTCCGCATAGGAATTACTCATGCATTTCATTTGCTGGTGACACAAGCTAATTGCAGAGTTAGAAGATAACACAGTACAGTTAATTTCAGTTATGCTGTAGTTACTCAGGCCAGAATTCCAATCCAAACCTTACTAGCATGACATCTGGGGGATCCCAGAACTGCCGCAAAAGGAAAAAGGCTTCAGACAAGAAGCAGGAGGTATCTGACTGCCTTTCGGTGTTCCTAAACCTAAAACACATTTGGACTTTTAAGCCTCAAAACTTCAAAAGAAAACAAGGCAGGAGGATGCTAACCAGATCTGCTATCAGCACAGCAGCCTGACTGGCTCACGGTGCAGTACTGGGCCTGAGCAGTTAACTTAGTTCCTCTGTGACTGCATTTATTCAAAGACTGCTGGAGATAAGATTTCCACTTTACTAATTATAATTTTAAAGCAGTGAATTTCCACCAAGCAATATAGGTTTACCCTCGAGAACACAGGAGGAAAATCCATCTAGAGTGAAGAAAAGAAGTCCAAATGAGAGGCAGGGGTCTGTGCGATCAGTAGCTGTAAGAAAACAGAAATGTATCCTGTTACATTTACAGCAATGATAGAAATGATTCATTTTAGAGATTGTAATAAAAGGTCCAATGTCTTAAAAAAAAAAAAATATATATATATATATATGAAAACGTAATTGAAGATTGAGATCTAACAGTTGTACCCAGAAAGAATGTAGAGGGAAGGGTATTTTATACATTAAAAATACATCTTCTGCAGGTGAGAAATTAAAAGATTTCTTTTTACTCTCTTATGTATTCCAGTGAGAATATGTACAGTACATTCAGAATCCATCTCATTCTGGAAACGCAGTATTATTGTTATTCTGGTGTGGGAAGATTGATCACCCTGTTGTGTTACTGGGAAGCTAAACTGATTGAATTAAAACGTTAATCTACAGTACAAATGGAAAGCAGCAGTAATATCATACATTACCTCTGCGTATACAATATGGATAATGGTAAAATAAGAAGAATTAGAGAATTGCGTAGGTGACAGAATTACACAGTAAAAATAATGACCAAGACAGAATAGTGACAGATTGTGGATGCATTCAATTGAATTTGAGCTTAAATATTAGCTCTTCAAAATGAAAATAATCAACTCGATATTAGAGCTGACAGCTCTGAATCTGCGTGAGCTTTCTTGCTCTGTCATGCAATCCTTACTCGGCTCAGGATTTCATATAGAGCAGTTCCAAGGCTTTACTAAATGGCAGTATTTCAATCAATCAACTTTGGGCTACTTTTGCTGCCACTACAAAATAGTGTGTTGGTTTTAACTGAGGAGCACTGTACAGTTGGGTTATTCTGTCTAGGACAATTATCTCTCCTTGAATTCAGGACGGGGAGAGCTGTATGAGCTCTTGTCAGACTGTGCTCAAAGCAAAAAAAGGCATAATGGGTATAGTTTAATGTAGAGAATAAAAGGAGAGTGAACCACTGTGGCTTATTACATTATGAACACAATACATGTGTCTCTTACAGAATGCAGCATCAAAACACTGACATTAAAACTGTTAAAATGGTCTCTACCCTAAATATTTAATGTGTCTTTGGCATATCCTATGTGTCACCAGTAGCTGCTGGTTAATGCTGATGGGCTCACAAGGTCAGTGTGAACGGCCTGAATTTTCAGCTCACATACGTACGTGAAAGTTGCCATTTTAAAATACCAAACAACTCACTCATGCATTACATCTTTGATCGTAAAGCCAGCAGCAGCCGGGCCGTATCGCTGACCTGGCGTGCAGATGTGCTCACTGAAGTTGTGCGCTCACACCCGTGTGCACCGTGCTGGGAGCGTTCAGCTGAGCTGCTGTGACACAGATAACCACTGCCCCTCTATCTTTCTTTTCCCTTTCTTCCCCTATTCCAGTAAATACCTCTGCAAAGCTTTTTACAAATCACTATCTAGATATAAATCTCCTAAGCAGTTTGCTTCAAATTTCAGAGTAGTAGCACAGCCCTGCAGCGCTCTCCCTTATTTCTGAGCTACTGCTGTCCTTTATTTAACTGAGAGGAGGAGATTAAAGAAAGGAGCAAAGAAAAAAACCTTTGCCACGTTCTGATGTGTTAAATATTCAGGAAAAATGCAGATACCTGAAAATGCGGTTTAACTGGGAGTAAAAGTGGATTTGAGCCCATCAGCTTATTAAAGATAACATCTTTTCAATCAGTAAAATAGAACATCTGGGGCTTCCATCTATTTTTTTTTTCTCCCGCAG
Seq C2 exon
GGATCCTAATCATCTTTCAGTACCTTATCATTATTATGAACCTTTGGGACCTGATGAATGCACAATGTACATTTCACACGAGCGGGGACGAAAGGGCAGCCATCATCGGTTCATCACAGAGAAACGAGTGTTTGAGAACTGGGCGCGGACATTCAACATTCACTTCTTCCAACCAGACTGGAAACCAGAACCACTTACTGTAAATCACCCCGAGATGAAAGCAGCGGTCTGAGGGATGAATGCAAAAGACTGCAACCGCAATCACCGACTGTATCAGCCATCAGGGGGTTGGACCTTCTGGGACAGCAAGGCAACTGACAGCAAAAGGGTAACGGGATTTGCAGCTGATAACTGCAACAAGTCAGGAAGTTCCGATGGAGGGGTATATAGAGAGCACTTTCTGTTGAACTGTGTGTTAATCCGCTATATCGCCTTTCTGGCCATCTGACTTCCTGTACGTGTGTGTGATTTGTGAAAAGCAACTCGGTATCATTACAGGATGGGTAATTCATTATGGTTTTTTAAAGTACAGCACCACTGACTTTTCATAGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009021:ENSGALT00000014679:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(13.2=100)
A:
NA
C2:
PF0077713=Glyco_transf_29=PD(21.0=73.1)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]