DreINT0156612 @ danRer10
Intron Retention
Gene
ENSDARG00000039220 | st6galnac5a
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5a [Source:ZFIN;Acc:ZDB-GENE-070705-488]
Coordinates
chr2:9362942-9367590:-
Coord C1 exon
chr2:9367483-9367590
Coord A exon
chr2:9363189-9367482
Coord C2 exon
chr2:9362942-9363188
Length
4294 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TCTGTTTTCATTGTGTGCAGGGA
3' ss Score
8.86
Exon sequences
Seq C1 exon
GAGAATCACTAACTCATGGTTAAGCACAGGCTGGTTCACAATGACTATTGCCTTAGAGCTCTGTGACAGGATCAATGTTTATGGCATGGTGCCTCCAGATTTCTGTAG
Seq A exon
GTAAGTCATATTTCTATGCAGTAAATTCTGAGACCACTTACCTTTAAACAACAAATATATTTAAAAACAAAAGGATTATCTTTACATGTTGTTGCATTGTTTTGGTATTTATAAAAGGATCAAGTGACATTTCGTATGCTCAAGCGATCTGACAGCAGTCAGTGCTCCACATAGAGATCTGATCTAAGCATCATCATGAAGAAACAACAAACTGAGACTAAATCCAGAAGAATTGTAGCAACTTCTCCAAGACACTTCAAAACACCTACCTGTCGTGCTACAGTACTGTAATGTGTAAACATGCATTTAAATATAACGGCATAAATAAATATTGTTTGAATATTATCTTCTATTAACTACATTAAATCAACACTTGCTATAACCGCCGTTTGCATTTTGCCCTACACTGCAAACATGTTTGCATATAGATTGTTTTAGTTTCTAGTCCAAATATCTAAAACTTTTAAAATCATATAGGCAAGCAAGACATATTGTGTTGCTTTTAGAAATATGCAGTCGAAATTAAATGAATCTTACCGTAAAACAAGCAAAATAATCTTACAAGGGGGTAATCAAAATAATCGTGTTTTTCCTTTTGACATACGATTATTTTGCTTAGCCCAGTGGCAGAATATTTAGCTTGTAATAGGGAAAAACTCATTCTTCTTAAAACAAGACAGTGGGCTCTATTTTAATGATCTAGGCGCAAAGTCTAAAGCACATGGCGCTAAAGCATTAAGGGTGTGTCTGAATCCACTTTTGCTATTTTAATTATAGAAAAATGCGGTTTGCGCCCCAGACATGATCTAACAGGGTTGTGCTTTTTTTCTTATTGAGTTATGGGTGTGTTTTTAGCATAAAGTGCATTAAACCAATCAATCTGGCCTCTGACTCAAGCAGTTCTTACTTATTGTGGAGGTGCGCTTGTTTTAGAACTTCCGATTCAGTTGACTATAGTAGAAATGACTTTAAATATTAAACAAAAGAAAAAAGTCAAAATGTTTGCATCTAGCGCATTAATTATGTACCTACTGTATGCGAGTCCAAATGCTTTAACATTGCTTAATACACACAGTATGTACAGCAATACACAAATATATATTTAAATAAATAAATAAATAAATAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACAGGGCTTTACATTAACACCCGCCAACCCGCCAAATGCAGGTAGATTTCAACTTTGGTGGGTTGGACATAATTTTTACATTGTAGTTTTCTTAAAGCAGGGTTCACAATAAGGATGGCCCAATATGCGTGCAAATGCGATCTTTGAATTGAGGAACAGCACGACTGAGAACAATAACTGTTCGCGCGAGACAAAGCAGGTGAATACCGTATGAGAGGATAATTACTGACACGCATCACATCACCTGTTAAAAGCGTGCGCGCTCCTGTTTACTTGCACTTTTTTTCCGTTCGCTTGCGATCGGTTCTCTTTGAAAATGACTAGACAAAAAAACGTTGCTCGTGCACCCACAGTACTGCTGCTTTAAAGAGCTCAAGATTGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTATATATTTATATATATGTATATTTATTTGTAAGCAACAGCAGCAGTCAATGCTTTCGTTTTAATTATTCTCAGGCACGTGATCATCCTTTCATTATCAATCGTGGTATGTTTTTACGTGCTTTCTTTTGCTTACAGTTATTTTTGTTAATATAGTTTAATTATCATCCTTTACAATAACTACTTTAATATGAGATTTTTGAGATGACAAAATGAGATGACAAAATTGTGGCTAGTGAAAATGGCAAGTGGCTAGTATATGTATGTATGTATATATATATATATACATACACACACACACACACACACATACTAGTGTGTCCATGACTATACAGTCAAAGTAGTATAATACAATGTGCAAATATCAGTTTGCAGTGTCATGCAACATAACAAGGTGTGTTTTTATGTCTAAAATTGAATGAAGGAAAATAAACCTGGAAGTCTCAAGCCCACACAAATCAAATGGCTGCAGCCACTGTATGTGAAGAATAAGGTCAATACCTCAGTAAAGTTTTGCTGCTACTTAAGAACCACTTTTCCTGGTTCAGAGCCAGTGCTTTGGGTGTTGAAACACAATGAACCGAGAACCAGCAGTCAAACTGTCTTGGTGGAAGAGGTGTACTTCAGACACTCAGCAACCTGTTTTTAAGGTCCATCTGTAATCCCTACGGTGTTAGTCGTCTCTGTGCCTCAGTGAGAGTGTGACCTGAACCACAAGGGCCATCTGACTTGACATCCACCTCAAAGAGCTTTTTGCCCTCGGGAGCTGACTTGCATGCTCTGCTACCAAGCATACAACACAAATGGTGCGTCACCATCCATAACAGGGAGATGAATGCACCCTCTGCTTGAACTGCTGTTTGTGTGTATGTCTATGTATGAAGAAATGACCAACAGACATCATCAATATATATATAATACAAAAAGTTCCTAAAATGTATTGAGCATCCTTATTAGATATACACTCAGTTTATTAGGTACACCTGTCCAGCAACTCAATGCATTTAGGCATGTAGACATGGTCAAGACGATCTGCTGCAGTCCAAACCGAGCATCAGAATAGGGAAGTAAGGTGATTTAAGACTTTGAACGTGGCATGGTTGTTGATGCGAGATGGGCTGGTCTGAGTATTACAGAAACTGCTTATGTACTGGGATTTTCACGCACAACCATTGCTAGGGTTCACAGAGAATGGTCTGAAAAAGAGAAAATATCCAGTGAGCGGCAGATCTGTGGTCGCAAATGCCTTGTTGATGCCAGAGGTCAGAGGAGACCTCGTTACAACCTAGGTATGCAGAAGAGCATCTCTGAACACACAACACATCCAACCTTGAGGCAGATGAGCTACAGCAGTAAAAGACAACACTCCACTCCTGTAAGCTAAGAACAGGGACTAAGGCTACAATTGGCACAGGCTCACCAAAATTTGACAATAGAATATTTGGAAAACAATGCCTGGTCTGATGATTCTCAATTTCTGCTGCTACATTCAGATGGTAGGGTCAGAATTTGGCATCAACAACATGAAAGCATGGATCCATCCTGCCTTGTATCAACGGTTCAGGCTGGTGGTGTAATGGTGTGGGGTATATTTTCTTAGCACACTTTGGGCCCATTAGTACCATTTGAGCATCATGTCAACGCCACAGCTTACCTAAGTATTGTTGCTGACAATGTCCATCCCTTTATGACCACAGTGTACCCATCTTCTGATGGCTACTTCCAGCAGGATAACGCGCCATGTCATGAAGTGCAAATCATCTCAGACTGGTTTTTTTGAACATGACAATGAGTTCACTGTACTCAAATGGCCTCACAGTCACCAGAACTCAATCCAATAGAGCATCTTTGGGATGTGGTGGAACAAGAGATTCACATCATGGATGTGCAGCCGACAAATCTGCAGCAACTGTGTGATGCTATCACATCAATATGGACCAAAATCTCTGAGGAATATTGTCGAATCTATGCCACATAGGATTGAGGCAGTTCTAAAGGTAAAAGGCGGTCCAACCTGGTACTATTAAGGTGTACCTAATAAAGTGGCCGGTGAATGGAAGTCTGATCAAAGTGTTTTTTTTTTATTTTTTTTTATTTTACAACTTAATTGTTTATTCATACACTCAAAAATATTTTTGCTGCTTATTCAAGCTACTTATTTGAAATGAGCAAACAACAAATATTTTTGGGGACAACTGAATTATTTTATGTTCAATCCACTTAAATTTGTTAAGTTAATCTATTTGTGTAGTAGAACACAGCATTTTTACAGTGCAATGTTTAAAAATTCATATGTTGATCTTTCTATCTGTCTATTTGGTTTTTTTTCCTTGAGTTATATTGCCATGACAGTCCCTGCTGTGCGTCAGTGCTGCGAAAAATAATAATTGAGAACTGAAAATGACATGATTCATTGTGAATCCCTGCTGAGGCATGACCTCTCCCCCCTCCATTTCTCACCCGTAATGTATTACATAAAATCAATTTATTCCCCTTAAAGCGAGTTATTCTCCAAACCAAATCAGGTTAATTGCCTTGAAAATTAATATCTAGCTCAGGATTAATTGGGAATCAGGGAATGCAATGGCAACTCTCACACACTCCCCGTTTTAATCTCTGTTTTCATTGTGTGCAG
Seq C2 exon
GGAGTCTCAGCACTCATCTGTTCCGTATCACTACTACGAGCCCACGGGTCCAGATGAATGTGCCATGTACATCTCCCACGAGCGAGGCCGTCGAGGCAGCCACCATCGTTTCATTACAGAGAAACGTGTCTTCGCAAACTGGGCTCGGACATTCAACATCCATTTCTACCAGCCAGATTGGAGTCCTCCACCGTTACCCAGAAACAGCACAGCAACCGCAGCCTTTCCCAGACCGCAGAAGACGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039220:ENSDART00000133092:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.207
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(13.1=100)
A:
NA
C2:
PF0077713=Glyco_transf_29=PD(19.3=63.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]