MmuINT1032281 @ mm10
Intron Retention
Gene
ENSMUSG00000026811 | St6galnac6
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:MGI Symbol;Acc:MGI:1355316]
Coordinates
chr2:32618497-32620806:+
Coord C1 exon
chr2:32618497-32618604
Coord A exon
chr2:32618605-32619339
Coord C2 exon
chr2:32619340-32620806
Length
735 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCCCCGTTTGCTATGCCCAGCCA
3' ss Score
3.67
Exon sequences
Seq C1 exon
GGAAAAGTCCCATTCCTGGTTGAGCACGGGCTGGTTTACCATGGTGATTGCGGTGGAATTGTGTGACCATGTGCACGTGTATGGCATGGTCCCTCCTGACTACTGCAG
Seq A exon
GTGAGCTCCCCTGGCCACTGTCCCCTGGGGACCGTGCCCAGTTCCTGACTACAGGGTAAAGCTGGGAGGTTTGGAGACATGGGTGGGGTACCTCTGAGGGCCTCTGTGGGATGGTATTCATGTTGATCTCCAGAGGTGGGCTTCTTGGAGATGCCCCAGGGGCTTCCACTCCAAGCTGAGTTGAGTTTGTTGGTAATGACTGGATGGAGAGCCATGGGGTGCTAGCTGTGTTCTGCCGAATGCTGACCTTGCAGCGAGCATCATCTCCTGCCTCATTAGTCCTCACACAATGCTGCAGCACCACCACCACCCCCATTTCCTGAGTGCAAATGAATCGAGAAGGGTATTTAATGAGGGGACCTAAGGGCTCAGAAGCTATCAGGGTACCAGGCTTCCCAGCCCCCAGTTCTTAACCACTGCCTCACCCCCAGCCTCCACTGCTGCTCTGTAGAGAAAAGAAAAAGGTTACATTTTGTTTAAAAGAAACTGAATGGTTTTGAAAACCTAATACACACACACACACACACACACACACACACACACACACACACGCACACACGCACGCACGCGCATGTGTATAATATGCCCATATATTTATTAGATAGGGAAACTGAGGCTCAGGGAAGGGCAGAGATCGACCCCACTGAGGCTCTGGAGCAGGTAAGGGGTAGAAAAGACCCCTAACAGGCGTCCACCTTGCCCTCCTGTCCCTGATTCCCCGTTTGCTATGCCCAG
Seq C2 exon
CCAGCGGCCCCGCCTGCAGCGCATGCCATACCACTACTATGAACCCAAGGGGCCGGACGAGTGTGTCACCTACATCCAGAACGAGCACAGCCGTAAGGGCAATCACCACCGCTTCATCACCGAGAAGAGGGTCTTCTCGTCCTGGGCCCAACTCTACGGTATCACCTTCTCCCACCCCTCCTGGACCTAGTTATCCTGTCCACCGATCTCGGACAGATACAAACGAAGTGGCTCTGGCCCAGCCATTTAACCATGGCCATCTTCCAGCCAGTTCAGGCTGGCTGGAGTATTTCCCAGCCAATCAAATCAGGGCCTTGATGAGGGTTTTTTTTTTCCTCCAGCCAATCGGGGCTGGGGTTATCTCTTGGCCAATCAGGGATTTGGAATTCTGTATGGTTTAATCGGGTGTCAGGGGGTCTTTCTCGTCTAGTCAGGGTCTGAGCATAGTCTATCAGGGTATAGGGGTCTTTCTGAGTCAATCTGAAGCTTAGGACATGTCTTTTCCCATAAGGCTTTGCTTCAGAGCCCCAGGAATGGGCCCCCAAATCACTCCCTCCTTAGCTGGGACAATGAGGTCCTGTCCTAAGGATCTGAGGACTTGGTGTTGCCCCACAGTTGCCAGAATCAGAGCTACTGTAGGGGGGAGGGGCTGCCAGGAGGCCAGGCCAAAGGATTTGTGGAGTTCTAGGAGTGGTAGGGAAGCCTAGGAGGTAAGAGGCGGTGTCCAGTTCCCGGTTTCTTCCTGAGTGACCTTAAACAGACCCTCTTGTCTTTCTGGTATGCTGTGATGACATCATAGCTCCGTATGTGGAGACCCTCACTCTCCGTTATACTTAAGTGTAAATTCCTCAGCTACCATTCCTCGCTGGGGGACTCAGCTCCCTGGGGATGGGGAGCCTGGGGTACCCTTCCCTGCCTCCTTCTAGAAACTTTAGGGTATTTTTGTGCAAGTGCCCCCCATGGTTGGGGGATCCTGACAGAAATGGGGCAAACATGAAGCTGTTTCTCTAGCCCCTCAATCCAGCTGCCGTTAGCCTGGCTCTAGAAAGGCCAGGCACCTCTTCCTACCCTCCAGCAGGAGAGCATTCCCTGCTGCCCGAAGGAGCCTTTGGGACTGAGGAAGGGGTATCCCAGCCACACCAGGGCTTCGTGAAGTTTTTGTCTGGAGATGCTGAGGGCTTTGGGGAGAAGTATCCTCCCCCAAGTTTGGGATGAGACTAGAGATGGGGACTGGGTTCTGTCCCTTGCTTAAGCACTTTATTAAGGGCAGGACTGGGTGGGGGTGTGGGTAACCCCCATTCTTCCACAGCCTGCAAGGGAAGGGCTTCCAGAAAGGCTGTGGACTGGGGGTTGGGGGAGACTAGCCAGCAGTGAGCCCTGCACAGCAAGGTAATGGGGGTTGGGCAGTGACAGCCCTAGATCTGGTTTTGTAATGATTTATACAGAAATAAACACGCCTAAGCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026811:ENSMUST00000095044:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=NA C2=0.063
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PD(13.4=93.3)
A:
NA
C2:
PF0077713=Glyco_transf_29=PD(20.8=89.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTCCCTCCTGACTACTGC
R:
ACCCTCATCAAGGCCCTGATT
Band lengths:
348-1083
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types