BtaINT0141837 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67687973-67692530:+
Coord C1 exon
chr5:67687973-67688131
Coord A exon
chr5:67688132-67692434
Coord C2 exon
chr5:67692435-67692530
Length
4303 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CTTTGCTCTTTGAATTACAGAAT
3' ss Score
8.29
Exon sequences
Seq C1 exon
GCAGAATGCATCAGAACTGGCAGGGGGACCCACACCTGCGTATGCCGTGAGGGATGGACCGGGGATGGAAGAGATTGCTCAGAGATCAACCCTTGCTTGCTGCCCAGTGCTGGCAGCTGCCACCACAATGCGACCTGCTTGTATGTAGGCCCCGGGCAG
Seq A exon
GTAGGCGTGATTAGGTGGAGGGCAAAGCGGAAACACGATTCCTGCAGTGGATTTTCTTTTTTTCTCTAAACACAGAAGTACTCTGGCTAGAACTTACTGCAGCTCTTTAATCATTTGTAACAGTGGGAAGGAGTTAATTGTCACAGCAAACCTATGACTAGGCAGTTATTTTCTTTTACCTTTTGATCCCATTCACCCACACCCCACCTCTGGCAGCCACCAATCTGTTCTCCATATCTGTGAGCTTGGTTTTGTTTGATTTTTAGATTCCACATATACGTGAGATCATATGTTGTTTGTCTTTTTCTCACCTGTTTCACTTAGCATAGTGTCCTCAAGGTCCATCCATGATGTTACAAATGGCAAGATTTCACTCTTTCTTTGGCCGAATAGTATTCTAATGTATACATACACCACATATTCTTTATCCATTCATCTGTTGATGGTCAGTTTGGTTGCTTCCATGTCTTGGCTATTGTAAATAAAGCTGCAATGAACATGGGGGTGCATATATCCTATCAAGTTAGTGTTTTTGTATTTTTCAGATAAATATCCAAAAGTGGAATTGCTGGAACATATGGTAGTTCTGTTTTTAACTTTTTTGAGGAAACTCCATACTATTTTCCACAGTGATTGCACCAATTTGCATTCATATCAATAGTGCACAAGAATTCCTTTTCTTCACATCCTCGCCAACACTTTATTATTTCTTGTCTTTTTGATGATAGCCTTTCTTGCAGATATGAGATGAGATACCTCATTGTGGTTTTGATTTGCATTTCTCTGATTATCAGTGATGTCGAGCATCTTTTCATGTACTTATTGGTTATCTATATGTCATCTTTGGGAAAATGTCTGTTCAGATCTTTTACCCATTTTTTTAAATTTGGTTGGTTTTTCAGGGATTTTTTTTTGGTTTTTTTGGCTGTTGAGTTATATGAGTTCTTCATATATTTTAGATATTAACCCCTTAACAGATTATGATTTGTAACTATTTTCTCCCATCCCATAAGTTTCCTTTTCATTTTATTGTTGCTTTTCTTTGCTATACAGAAGCTTTTTCATTTGATGTAATCCCACTTGCTTTTTTTCGCTTTTGCTACCATACAGGTACTATTACATAAAAAAGAAGACTGAGGCATGGAGAAGTTACATACTTTGCTCATGTTACACAGAAACCAAATTGTGGTGTGAAATTCACACCCAGACAGTCTGACTCCGGAACTTCCCTCTTGGTCTTCCCTTGATCTCACTCTGTATTTCTCCATAACACTCTACAGTTTGTTGATCACTTTCACTTAACCTCATTTAAGGGACACTGAGGCAGAATGAGCTACTTCTTAGAAATTAATTTCGCTCCAAGTGAGGTGATGACAGTGTATCATGACTGTAGCCATGAAGAAGTCCTAATCATAAAAGAACTCACTGCATTCTTATCTCTTGCCAACCATTTGGCCAACAATTCCATTCATTTTGGACTCACCAGAGTTGCCACATTGCACTTGAGGAAGAAAAACAATTTCTTGGTATCAGTATTAGTTTGCTAAGACTGCCGTCACAAAATATCACTAACTGGACGTCATAGAGCAACAACACTGTATTGTCTGACAGTGTGGGAGGCTCGAGGTCCAAGATCGTGGTGTCAGCAGGTTTGGTTCCCTTTAAGGGCCGTGATGATGAATCTGTTCCATGCCTCTTGGTGTCCTTGGCTTACACATGCATCACCCTGATCTCTGCCTTCATGTTCACATGACCTTCTCCCTCTGTGCCTGCCTATGTACAAATCTCCCCTTTCTGTAATGACACCAATCATGCTGGATTAGGGACCCACCTTACTCCAGTGTGACCTCATCTTAACTAATTCATATTAACAATCCTTTTTCCAATAAGGTTACATTCTGAGTTGCTGGGAGTCAGAACTTCTACATAAGAGTGAGGAGGTCTGGAGAGGGACACAATCCAACCTGTATAGTATCTGTTCCCTTCTGTCTATCATCCTTTCTACAAACAAATATGAAAAACTTCTAATGGGGGTGATGGAGGAAGAGAAAGGACTTTTTAGGGTGTTACGTAAGAAATAAAATAGGCTGATTCTAGGATTGCCCTCAGTAATGTTACTAGTTGCCTTGAAATCTTGTAGATATTCCAACTAGGCAAAAGTCCTAATTACCATGAATGTTCATTTTAAAAGACAGACCATGTTGGGGTCAATATATTAGTCTTGGGGGTGCAGGAAGGTGCTACCCCAAGAAGATTAAACACTCTTGTTGATAAGGTCTTGCCCTAACTTGTAAAGTTGTATAGATGAGCATATATTTACATATATAAATGAGCATATATTTACATATAAGATACCCAATTTACCTTATAAAGCATATACAGCAAATAATACTTAAACCCTTAAAGATGAAAATTCATAAATAGAGGTTCTGTTCATTTCTTCTCACAACTTAGTGGGTCATCTTGTATCACCTCTAAATGTAACCACTCTCTAGACCAGCCCCTCAGTAAACCTCCTCCAATCAAAAGCTCCTGCTTTCCCACCTCCGTTCTTTTTTCTCTAACATGTGACCTCAGTTTGCATGGACTCCCCACTCCCCCCACCCTCTCTTAAGGTCCATCCACACCACACTTCCCAGAAGAATCTTCCCAGCTCATCCCCCCTCCTCTGAACAGCTCTGGTCTTCATCACAGAAGCATCTCATGTGCCACTTCATCCATAAAACTTACAGCATCTCTTGTTTTCCAGTGTTTGTTAAAGATCGGATTCTTCTTACTTACTTGGTATGCTTTGTCCTCCTCGCTTCAGAGAAAGCAGCTTCAAGGTTCATTGCTGGTTCCATAATGGTCACTCAGTACCTCTGTTGAAATGATTACTTCTTTTTAAGTTGAGTTTTTTAACTTCAAAATAATGTTGGAAGACATTTGGGAATAAAAGTGAAGAGAAAAATTAACACCATTCACAGTGTACCCGCAGTCACCATTTGTGTGCTGATGTATTTTTTCCTTCTGGTCTTTTTAATGCAGAGGTTTTTACTTTCCTCTCCATTGTTGCAATCCATTACATTTTTGTTTGGTTCCTGTTCTGTACTTAGCACACACATTTCCCCATTTTGTCATACAAGCCATCACTATCATATTTAATAACTGCGTGATCGGGGCCGCTGCTTCCTTGTAGTTTGTATGCTACACAAAGTATCCAGCCTATGGGGCAAGCCGGGGCTGAAACCCAGCCTGCACCCTGCTCGCCAAGGTGTGGACCCTGGTGTGGACCCAAACCTTCCCAGAAGAAGGGGGGCATTTTTTTTTTTGCATGATGAAACTGCCTGCCTGCTGAGCCACTTGCCATGTGTTGTTCACGTAGAGATGGTACCTTCCTTACTCAGATCTGCCTGCTCAGAGGGGATGACTGTTCAAAATTACACAGTGTGCCTTATAGACCAGCAGTGGCCTTGTGCGTGGATTTCCACTAAGTGGATGCCTCATAACTTACTTCATCTTTCCCTCTTAGCTGAAGGGGCCAATTTTTTCAGTGGAATGTTCTTTAGGGTCTCTCTGAGATAAATCTCCATATGGTCCCTCTAGGGTAAGGAATTCAAAAAAGAAGTAACAACCAGCAAGAACCTACTGTATAGCACAGGGAGCACTGCTCAATGTTATGTGGCAGCCTGGATGGGAAGGGAGCTTGGGGAAGAATGGATACATTTGTCCCTATGGCTGAGTCCCTTTGTTGTCTACCTGAAACTATCACAGCATTGTTAATCAGCTCTGCTGCTGCTGCAGCGGCACTTCAGTCGTGTCCGACTCTGTGCGACCCCATAGACAGCAGCCCACCAGGCTCCGCCGTCCCTTGGATTCTCCAGACAAGAACACTGGAGTGGGTTTCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCGTGTCCGACTCTTAGCGACCCCATGGACTGCAGCCTACCAGGTTTCTCCATCCATGGGATCTTCCAGGCAAGAGTACTGGAGTGGGTTGCCATTGCCTACTCCAATACAAAATTAAAAGTTTTAAAACCTTTTTAAAGGTCTTTTAAAAAGGAAAGTAACAAGGAGCTTTAGACTGGGAAATGTAACATAGAATGCGGAGACCAATAGCTCTGGAGTCAGAGAGTAACAAAGACATTACTGGTGTTCTCTAAAAGGGTCAAACAGCTATGGTTTCCATACTTCATTTCTTGGTGCTGTGAGAGGGCAAGGTATGAAAGTCTGTTGTTTTCAATAGTCTCTTTTACTTTGCTCTTTGAATTACAG
Seq C2 exon
AATGAGTGTGAGTGCAAAAAAGGATTTCAAGGCAATGGGATTGACTGTGAACCAATAACATCATGCTTAGAACAAACTGAGAAATGTCATCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010:ENSBTAT00000007896:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(71.4=47.2),PF129472=EGF_3=PU(51.4=34.0)
A:
NA
C2:
PF129472=EGF_3=PD(42.9=46.9),PF129472=EGF_3=PU(27.0=31.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]