MmuINT0153406 @ mm9
Intron Retention
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86390562-86396163:-
Coord C1 exon
chr10:86396005-86396163
Coord A exon
chr10:86390658-86396004
Coord C2 exon
chr10:86390562-86390657
Length
5347 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CTGTGTTCTTGGAATTGCAGAAT
3' ss Score
6.51
Exon sequences
Seq C1 exon
GCAGAATGCATCCAAGCTAGCACGGGGACATACAGTTGTGTGTGCCAGCGGGGCTGGACAGGGAACGGAAGAGACTGTGTGGAGATCAACAGCTGCCTGCTGCCTAGCTCCGGAGGCTGCCATGACAACGCCACCTGTTTATATGTAGGCCCTGGGCAG
Seq A exon
GTGGGTGACTTGGGGAAGAAAAAAAAGAGGAAGCAGGATTCCAGTTGTGACTTTTTTATATATATATCAGAACCAGAGAGGTGCTTTGGTTTGAAATTGCTATGGCTTTGCCCTCAGTTGTGGTAGGAAGAATGGGTTGATTATCATAAAGAGTCTGAGACATCAGTGTCACTGGGATGCCACCTTACATCTGTGGCCCCAGAGAGGTTAGCGACAGGTTAGTGATTTCTTCTGTGCCACAGAAAAGCAATCAATCTCACTATGATTCACATACAGTCAGAATTCAGTCACCTAACCCATGGATCACACACATGTATCCAGAACATTCTATAGATTGCTACCTAATTTTAACTGGCTTCATTTCATGAAAAGAAGCAGAGGCTACTGCTCGTGAATTAGAGGGTTATAGAAGAAGAGATATAGAGATACTGACTACATTAATATTTTGGCCATGGAAATGATAGGTCCCCACTCCCCGTCTTCCATGTGCCCTTTCCTCCCCCAAAACAGTATAGGCATGCTCCACCGAGTCAAAGGAGCACAAGGCGTAGACAGTAAGAACCAGGACCTCCCTCTCACACCCCTTTTGATGATGATACAGCTTCGCACGCTTGTGCTCTAAAGCCAGGCTCTATTAAACCTTCAGATGATTTGGTTGAGAAATGCACATTGCCCATGAGACTGAGCGCAATGTAAAGCCTAACCTTGCTTTCTCTGATGGCTCCAGTCATTCCACCACGAGCCTTCTGCTTTAGACAACACATTCCCTCGTGTGTGTCAGGAACTTAGATCATGCATGTCTTGGTTACTTTTCTGTTGCTATGAAGAGACACCATAACTAAGGCAACTTAGAAAAGAAAGCATTTAATCGGGGGCTTGCTTACAGTTTCAGAGCGTGAGTCCATGACCATCATGGTGGAGAACGTGGCAACAGGCCAGGCATGCTGCTGGGGCAGTAGCTGAGAGCATACATTTTATCTGAAGTTTGGAAGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATATGAAAAAGAAAAAAAGAGAGAGAAACAGACTGAACCTGGTGTGGACTCTTGAAACTCCAATGCCCACCCTCAATGACATGCCTCCTCCAACAAAGCCACACATCCTCCACTAAGGCCACGCCCACTAATCCTTCCCCAAACAGTTACAGCAACTAAGGACCAAGCATTCAGATACATGAGCCTACAGGACCTTTCTCATTCAGACCACCACAGACCACAAAGGTTGCTACTCAGGCAGTGACAACCAGGGGAAAGTATGAGAATATATTTGGATCACTGGAAAGTCTGTTGGTTTTAATAGAAAATCCAATTACCTGTGCATTCCTGGAGAATGAAAAGTGACAGGGCCATGGAAAATTAAGTAGCGGCTCTCCAGAAAATGAAAGGTGGAATTGCTGTAGGATCCAGTGACTCAACTGCCCAAGAGAATTAAAAGCAGGGACTCCAAGGCATGTTTGTGTAACCATGTTACTAAGAACATTATTCACACTAATCTCTGACACATGCTACAGCTCCTAGATGAACGTGAAGCCTTTATTGGTGATACCTCTTAGATGAAATCTCTTTGTGTGTGTGTGTGTGTTTTATTTTTATTTTATGCGCATTGGTGTTTTGCCTATATGTCAGTCAGAAGCCCTGAAACTGGAGTTACAGACAGGTGTGAGCAGCCATGTGGGTGCTGGGAGTTGAGCCCGGGTCCTCTGGAAGAGCAGCCAGTGTTCTTAACTTCTGAACCATCTCTCCAGCCCCTTAAATGAAATCTCTCATGGACTCAATTCATAAAGGCAGAGAGTAGAAACACAGCTACCAGGGTCTGGTATGGAGATGGAGTTACTCATAAGCAGGTGCTTTTAGTTTGAGGAGATGCGGAAGGTTCTGGAACCACATCAGTGATGGTTGGACAGCAGCGTGAGAGTGCTTAATGCCCCTGAATTGTCTATTAAAAATGGTTACGACAGTAAATTTTGTCAGGTATGCTTTACCAAATTTTTTAAGAAGATGAAAAAGGAAAAACAGAGGTCTAAAAGAAAAGTTGAGACTCACACAACCACAAAGACTGTGTGAAGTTGCTGAGGTAAAGTTGGGGCTCACACAACCATAAAGACTGTGTGCTGCTGCTGAGGTAGGTGCAGTGTGATACAGGGCTCAGAAGTATGTCTGTCAGGCCCCAAGTTCTGCAAAGTCTCCTGGGTAAGGGGTGCCCTCCAGCACTTCAGCCTTCCTTACCCCTGCTCCCCTTTAGGCACAATAGATTAGAGAACATCTTGTGATCATGTCCACCAAAACCCAGGATTCCTTTACTCTTGTTGGCTCAAACCGAACACTTTCCCATCATTTCTCCTCATTCCCATCTCCTCATGCCCATGCTCATAACTGCAGAAATCAGGCCCTAAGGCCAGGATGCTCGCAAGAAGGGACAAACCCAACCTGAAGCTCTATAGTGGGAACCTGGGCTGAAGGAATTGACCATGTCTTGTTATATAAACCAGAAGAGGGAATGGTGGTATCCCGAAAGCCAAATGGAGTACATTTTCTAGAGAGGGACAGAGCAGATGCTGACAGACAAAAATCAAACAGACGTTTACATTTCTGCCCAATGTTTGACCCTTCCTGGGAACCACTGAGCTTGGTTGTGGGCATAATAAATAGCTAGGGTCAAGGCCCACAAGTCACCCTGTAGAAATGATCTGGTGTAAGGTGACAGACCATGTGAGCGACCAAATGCTAAACACCTTAAAACCGATGCCAAATGAGCTGACTGCTGCACTATTTACCCTTCTGATTCCTCTGACAGCAGCACCTTCACATGGGTCTAGTGTAAATGAGCTTTCCAATGAGTCCCCAGGAATCTAATCACAGAGGAGGCCACCATAGACTCATGCTCCTGAGTAGTGAGTTAATATTTGCTTCATTTGTGTTACCAGACTGCAGCTGAGAAAAGAAAACAAAGATGTCTTGGTGTCCATATGCATTGTCTAGGACTTACTATAACAAAAGTACCACAAAGTGGACAGCAGAGAACAATAAATATATTGTCTCAGTCTGGTGGCCTGAGTCAAGGTCAGCTGGTGCCTCCTTCTGAGGATACTAAGGAGAGAGATAGAGACCCTGTCCCTTGCTCCACCCCTAGCCTTGGGTGGCCTACTGGCCATCTTGGGTTGGGCCATCATTACCTAACTCCCAACTTCACATTTTTACAACATTCTCATTGTGCATACATCTCCTGTTTTCAAATAGATGCTAGTCCATTAGATTCAGGGTCTACCCTATTCAAATATGACCTTGTCTTAAGAAACTGCATAATAATTACCCTATTTCTAAATAAGGTCATGTTATAGAGTCCTGTAGGTCAGGATTTAAGCATGAATTTGGGGTCGAAGAACACACTTCAGTATGCACAGTGTCTATATTCTCTCCCACGAACAAGTGATAAATGTCCTGAGGGGAGATGGAAGAGAGAGGAAGTCTCTATAACATATTTAGGAAATCAAATAAACCCTGTCTACGATTGCCATCACTGGGTTGCAGTTGATTGGAAGGATTATTAGACACACTAAATGGATAATAACTTGAATATCTATGAATGTTGCTTTTAAAAGACAAGCATGTTTAGATCAAATATATGAAGGGTTAGGGTTTGGGGACACAGAGGTGCTGTTCTAGTAGCTGATGAGCTTGGGTTCCACCATGCACAAAGCATGCTTGGGTTTCATATTTTATAAAATATTGTACATGTGCATATAACATATATCCATTTGCCTTATAAAGCTTACAGAACAGGAGAGACTGTCAAAGATAAAATCCATACAACGGAAGTCCATTTGCTTCTTCCTACCACTGAACGATGTTCTATCAACCCTGACTGGGGTGTATATATACTTTCAAAATCCATCCTAAACAATTCTTCTGCAGTAATGCTTCTCCAGACACACTTCCTCACTGTGTTCCTCTCTCCTGACAACTCTTCTCCAGTAAGACACACTTCCTCACTGTGTTCATCTCTCCTGACAACTCTTCTCCAGTAAGACACACTTCCTCACTGTGTTCCTCTCACCTGACAACTCTTCTCCAGTAAGACACACTTCCTCACTGTGTTCCTCTCTCCTGACAATTCTTCTCCAGTAAGACACACTTCCTCACTGTGTTCCTCTCTCCTGACAACTCTTCTCCAGTAAGACACACTTCCTCACTGTGTTCCTCTCTCCTGACAACTCTTCTCCAGTAAGACACACTTCCTCACTGTGTTCCTCTCTCCTGACAACTCTTCTCCAGTAAGACACACTTCCTCACTGTGTTCATCTCTCCTGACAACTCTTGGACCTTTCCTGTTTACCTTTTAATGGATTTCTGCCGTCCTCTAGACTCATGATAATTCCCAGAACATCTGTCTTGTCTAACTCAATTGAAGAAATTCTTTTACATCATTTAAATGTCAAAATATTACTTTTTTATGGAAAACAATTAGGGAAATAAAACAGGAAGTTAAATCTGAGCTGATGTATTTTTTTCCTTCTGGCCTTTCTCATTGCCAGGTTGTTAGTTTCTTGTACACTGAAGTCATCTACTGCAGTTTCACTGGTTCAGTATCAGCCATTAGCATGAAATATTTCCCATTTTATCATGACACTGCCATCATCATTCTTTATTGATAAGCTGCATACAACCAGACCACAGAATATATATTTGAAAGTATATATTCTGCCCATTGGGCAAGTAAGGGTTGGAATACAGCCTGCACCCTGCCCACTGTAGTAGGGGGCTAAGCCCTCAAAGAAGAGGCACTTACTAGCTACATGAAGCTACATCAGCAGCTGAGCCATATGCTGTGGGTTGTCTATGCATATGTGATATGTTGAATCTCAGTGGGGAGGCATTATCTGAATTAAGCAGCATCTTCAAGCTAGCAATAGCCTTGTACATGGCTCTCCACCAAGTGGATAAGCCATGACTCACTTGGCTTTTCTATCTGTGTATAGGGGTCAGCTCTTCCCTTGTGATGGCCATGGAGTCTAAGCTCTCTTTATAGGCCTTGGTGAGGTTCAGAATTTTAACAGAAAGTTTTAAAAAAGCTACTGGGCAGCATAATGTGAATGTTGTGGTACTCAAGTGTGGCTGACTATGTGCAGTGACTATGTAACACTGATGTGTCTGGAGTCTAGAGCTTCTGTTCTTTAGGCGGGTTGAATGGCAATGGTTTCTGTAGTCTGCCTTTCAGTGTAATGGAGGGCAAGACTTGAGAGCACTTGCTTCTATAATCCCATCTGTGTTCTTGGAATTGCAG
Seq C2 exon
AATGAATGTGAATGCAAGAAAGGATTTCGAGGAAACGGAATTGATTGTGAACCTATCATTTCATGCTTGGAACAAATAGAGAAATGTCACCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-Stab2:NM_138673:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(69.4=47.2),PF129472=EGF_3=PU(51.4=34.0)
A:
NA
C2:
PF129472=EGF_3=PD(42.9=46.9),PF129472=EGF_3=PU(27.0=31.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: