RnoINT0144349 @ rn6
Intron Retention
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27456953-27461531:-
Coord C1 exon
chr7:27461373-27461531
Coord A exon
chr7:27457049-27461372
Coord C2 exon
chr7:27456953-27457048
Length
4324 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CTGTGTTCTTGGAATTGCAGAAT
3' ss Score
6.51
Exon sequences
Seq C1 exon
GCAGAATGCATCCAAACCAGCACCGGGACATACAGCTGTGTGTGCCAGCAGGGCTGGACAGGGAACGGAAGAGACTGTGTGGGGATCAACAACTGCCTGCTGCCTAGCTCTGGTGGCTGCCACGACAATGCCACCTGCTTATATGTAGGCCCTGGGCAG
Seq A exon
GTGGGTAACTTGGGGAAGAAAGAAAAGAGGAAGCAGGATTCCTACTGGGACTGTTTTTTATCACAACCACAGAAGTGCTTTGGTTTGAAGTTACTGTGGCTTGGCCCTCAGTTGTGGTAGGAAGAATGGGTTGATTATCATAATGAGTCTGAGACAGCAGTGTCACCGTGGTACCACAGAAGAGGCACTGTGGTTACAGTACCTTACAGATACGATACTTACAGAAGAGGACCTGTGATACCGGAGACGTTAGCGACAGGTTAGTGGTTTCTTCTGTGGCACAGAAAACCGATCAATCTCACTATGACACACAGTCAGAATTCACAGATGCCTCGGTCACCACCTGCCCCTTGGATCACACACATGTATCTACAACATTCTATAGATTGTTGCCTAATTTTAAGTGGCTTCTGATGTGTTTATAAAAAGATAAAGAGAGGGGGGTATGTTCTGTGGAAGTGTGGTGAGGTATGGGGGAAGGGGGTGCCTCAGTGGGCTCCATGTTGAGGTATCCTTTCTCCCTGAGGGACCAGCCACATGATGGCATAGTATAGAATAGAGTTTATTCAAAGCATGGGCAGGGAAGTTAAGGGGGTAGTAGAGAAAGGGGGAGAAGGGGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAAGAGGAAGAGGAGAGAGCCCAGCCATAGTATGTGGAAAGGAGCGGGGAAGGAATGGGGAGAGAGTTGGGGCAGGAAGGCAAGAACAAGAGAGGAACAAGAGAGAACAAGAGAGAAGAGGGGACAAGCAGCCCCTTTTATAGTGTCAGGCCTACTGACTGTTGCCAGGTAACTGTGGGGTGGAGCTTAGACAGAATGCTAACAGCTTCATTTCATGAAAAGAAGCAGAGGCTACTGCCTGGGAATTAGTGAGTCACAGAAGAAGAGATAAACAGACTACATTAAGATTGTGGCCATGGGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGCCAAAAAAAAAAAAAAAAAAAAAAAAAGATTGTGGCCATGGAAATGATGGTCCCCACTCCCATCTTTCATGTGCCTCCTCTTCCCCCAAACAGTATAGGCTTGCTCCATCAAGTCAGGGGAGCACAAGACTAGAAGGTAAGAACCAGGATCTTCCCTCTCCCACACCCCTTTTGAATGACATACAGTTTCTCACACTTGTGTTCTGAAGCAGGACTTTATCAAACCTTCCGATCATTTGGTTGAGACATGCATGTTCCCCATGAGGCTGGGCACAGTGTAAGGCTCAACCTTGTTTTCTGTGGTGGCTTCAGGCCTTCCACCACAGCCTCCTGCCTTACAGGACACATTTCCTTGTGTGTGTCAGGAGCTGGGGCAGCACAGTGCTTGAGTCACGGTGCTTGGTGAGACCTAGAGGCAGACCATGCCCTCCTTCACTCTAGGAAGGAATTCACCCAGCAGATGAAGGTCTGCCCCAGTCGATGTGCCAGGAAGTACGTAGAGAAAGATATCTTTAAGAGCCTCTGGTGCTATTCCTTCTCCTCCCTCTTCCCAGCTCCAGGAACTGAGTATCTCTCCTGTGAAAGCAATTCAGGGCTAACACTCACAGGGCAGTAAAGGGGAGGCTAATGCTTAGAGCATTGGGACTCCATAGGAGCTCGTGACTACCAAACAAAGGGATCTTCTTGGAAGTCTTCCTAGTGAGACTCCCCTCAGGTGGCTAAAGGGAATGAAGGGGACAGAGAAGGGTGGTAAGGAAGGATGGCAAGAACACCACAGGATATCCGCCCGGCGCCACACTTCCCTCTGGGAATTAAATTTGAAGTCCGGCCAGGTGATGTATCCAGGTCCCTCCAGTTCAACATTCATTCATATAGTGCCCAAGTTATTCACTGTGCTGAGTAACTTAGGTATCTGTCTTGGTTAACTTTTTGTTTAAGAATATCTTATTTATCATATAGAAGACACTGTCGCATGTGTCCTCAGGACACCACCAGAAGGGGGCCTGCAGATTCCCATTACCAGATGGTTGAGCCACCCATGTGGTTGCGTAATATTGAACTCAGGACTCTGGAAGGGCAGTCGGTGCCTCTTGACACACGAGCCATCTCGTCCAGCCCGTTGTTACGTTTTTCCTGTTTGCTGTGGAGGGACACCGGTAACTGAATGGCAACTTAAAAAAGGAAAGCATTTAACGGGGGCGCGGGGCGGCTGGCGGGGGGAGTTGCTTATAACGGTTTCAAGGGTTGTAGCCTGTGGCCAACATAAGGTAGGAGAACGCAGCAATAGGCCCAGGTGTGGTGCTGAAACAGGAGCTCAGAGTGTATATTTTTATCTGCAGTTTGGAAGCATAGAGACAAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGACAGGACAGACAGACTTGGTCCAGGGTGTGTGGCTCTCGAACCCAATGCCCACCCAGTGGACCACGCCTCCTCCACACAAGCCACACCTCCTCCACTGAGGCCACGCCTCCTAACCATCCCCAAAACAGTTCCGGCAACTAGAAACGAACATTCAGATACATGAGCCTGCTTGGGACGTTCTCATTTCAGACCTCCTTGGGACCACCATTGAGTGCTGGCTTAGGCGTGACAACCGGGTGGGGAAAGTTGGGGAAGAGTTGGATTGCTGGGGAGTCTGATCGGTTTTAAATAGGAAAATTCCCTTTACCTGTGCATCCTGGAGAAGAAAAAATCGGGCAGAGGTCCTGGAAAAGTAAGTAGCTGGCCTCCAGTGACTGAACTGGCCCACGAGATTAAAAGTAAGGACCTCAAGGCACATTGTGCATGCCATAATTACTTAGAGAACGACTATTCACCACTCATCAAAAGCAGGGACACAAGCATGTAATGAAGTCTCCAGTCAGCCTTCGAAAGGAATCTGACACATTGCTATAGCTCTAGTGTGAACTTAAGACTCACCAGAGGTATCCCCTTATTATCGAAATATAATATAATATAGTATATATATAATATATATATAATAATATTACTATATATAATTTTTATTTTATGTTCTTTGGTGTTTTGGCCGCTGCATGTGTGTCTGTGTGAGGGTGTCAGAGCCGCTGAAACTGGAGTACAGATGTGTGTGAGCTGCCATTGTGGGTGCTGGAGTTGAGCCCTGGTCCTCAGCTGCTGAGCCACCTCCCAGTCCTTAAATGAAGTCCTCTCGGGAATTGTCAAATTCATGAAGGAACAGATGTAGTGGAGGGATGGAGTTACTCATGACAGGAGCTTTCATTTGTGGGGATTGAGGAAGGTTCTGGAATCACATCGTGATGGTTGGATCAGCAAGTGCGAATATGCTTAATGCCCCCAGAACTGTCTCCTAAAAATGGTTTACAAGAGTTGGTATTTGTACAGGTCTGCTTTACAAAATTTTTTAAAGAAGATGAAAAAGGAACACAAGGTCTAACATGAAAAGGTTAAAGTTGGGCTCACACAACCATAAAGACCTGTGGTGGTGGCTGCGAGGTAAGTTGGGGCTCACATCAACCATGCAAAGTCTGTGCTGTGTTGCTGGAGGTAAAGTTCGGGGCTCACACAACCATAAAGACTGTGTGTGGCTGCTGACGTAATATCACGACATTGCCATCATCATACTCTATTGATTAGCTGCGTACAACTGGACCGCAGAGTATATATTTATATTTGAAAGTATATATTCTGCCCATAGGGCAAGTACGGGCTGAAATACATCCTGCACCCTGCCACTGGAGTAGGGGTCTAAGCCCTCAAACAAGAGGCACTTACTAGCTCCATCAGCAGTTGAGCCGTATGCAGTGGGTTGTCTATGCGGATGTGATGCCCAGAGTCCATCTGCTCAATGGGAAGGCATTATCTGAATTAGGCAGTGTCGTCAAGCTAGCAACAGCCTTGTCCATGGCTCTCCGCCACGTGAATAAGCCATGACTTGCTTAGCTTTTCCCTCTGCATATGGGGGCTCCGCTCTTCCATTGTGATGGCCATGAAGTCTAAGCTCTCCCTAGAGGCTTTTGTGAGGTCCAGAATTTTAACAGAAAGTTTAAAAAAGGCTATGACTGGGCAGCATAATGTGAATGTCGTGGTACTCAAGTACGGTTGACTACGCACAGTGACTTACAGTCTGGAATCTGGAGTCTCTGTTCTTCAGGTCGGTTGAATGGCAGCGGTTCTCATGGTCTGCTTTTCAGTGTAATGCGGGGCAAGGCTTGAGAGCACTTGCTTCGATAATCCCGCCTGTGTTCTTGGAATTGCAG
Seq C2 exon
AATGAATGTGAGTGCAAGAAAGGATTTCGAGGAAACGGGATTGACTGTGAACCCATCATATCATGCTTGGAACAAACAGAGAAATGTCACCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948:ENSRNOT00000059538:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(89.3=47.2),PF129472=EGF_3=PU(51.4=34.0)
A:
NA
C2:
PF129472=EGF_3=PD(42.9=46.9),PF129472=EGF_3=PU(27.0=31.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]