BtaINT0141870 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67751533-67754815:+
Coord C1 exon
chr5:67751533-67751659
Coord A exon
chr5:67751660-67754665
Coord C2 exon
chr5:67754666-67754815
Length
3006 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TGCTGTTTCATCTCTTCCAGCCT
3' ss Score
8.51
Exon sequences
Seq C1 exon
GGCCAGAAGCAGAAGTGTCTGTACGACTTGCCCTTCAAGAGGAACCTGGAAGGCTGCAGACAGCTTTGCACTCTGGTGATACAGCTCCCCAAGTGCTGCAAGGGCTACTTCTGGCCAGACTGTCAGG
Seq A exon
GTAAGAGTGCTCTTATTATCTTGTGATTCTGAAGTGATTGCACAATCACTATGGAGCATTTGAAAGTACCAGAAGTATAAAGTGGAAGGTGAGGATGGGGGAGCAAGGGAGTATATTGTTCTTAATGATTCTACTAAGAAAAGATCCAAAAGCAATTATTCTAAAGAGTTGTGTAGCTTTCCTTCTCCATTTTTTTTTTTCTTATCATATTTGGTTTTTACAGAGTTGAGATTCTGCTGTACAAAGGTTGTAAATCATGTGTTTTCTGCTTAATGTTATAGAATAAGACATTTCCCATGATGCTAGAAACCCTATATTTTATTTTTGAAATGATACTGATTCCAGTCTATGATACTGATAAGCACACTAGTTTAAATGCATCTAAGGACATCCAGCTCAGCAGGGTGCTATATCAATGTGGTATATGTGGGCCACTATTTCCTAAAAACTCCCCTGATAAAAGATGTATAACATCACCCTTCCTCCCTAAGCTCGCCCTTTCAGGAAAGGGCTCCTGAAACCCCTGGGTCTAGATACAACTTCTACCCAATAATGCAGCAGCAACAGCATAACAAATGCCATAGAACTTCCTGACCACCATGCACTGTTTTAAATGAACACATTTATTGAGTGCTACTTCCCATACAGGGCTTCCCTGGTGGCTCAGTGGTAAAGAATCCTCCTGCCAGTGGAGGAGACGCAGGTTCGATCCCTGGGTCAGGACGATCCCCTGGAGAAGGAAATGGCAATCTACTCCAGTATTCTTGCCTGTGAAATCCCATGGATAGAGAAGCCTGGCAGGCTATAGTCTAGTCAGTCGACTTGAAGACCAAAGAACAAAACAATTTCCCATATATGGCAATACATCTGAACCTCTCAACAAACCCTAAGAAGCAGCTTCCATTGTCACCCCCATTTTACAGATGAGAAAGTGGAGGTGCACATTGAATAAGAAGCAAGTCCAAGTTCCCCCATTGTGTCTCCAGGAGCCATGATTTTAGGTATAATGGGCTTTCCTGGTGTCTCAGTGGTAAATAATCCATCTGTTATATAGGAGACATAAGAGTTCAGTTCAGTTCAGTCACTCAGTCATGTCTGACTCTTTGCGACTCCATGGACTGCAGCATGCCAGGCCTGCCTGTCCATCACCAACTCCCAGAGTTTATTCAAATTCATGTCCATTAAGTCCGTGATCCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCTTTCAGTCTTTCCCAGCATCAGGGTCTTTCCCAATGAGTCAGTTCTTCACATCAGGTGGCCAGAGTATTGGAGTTTACACTTCAACATCAGTCCTTCCAATGAATATTCAGGACTGATTTCCTTTAGGATGGACTGGTTGGATCTCCTTGCTGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAACATCCATTCTTCAGCACTCAGCTTTCTTTATAGTCCAACTCTTACATCCATACATGACTATTGGAAAAACCATAGCTTTGACTAGATGGAACTTTGTTGGTAAAGTAATGTCTCTGCTTTTAATATGCTATCTAGGTTGGTCATAACTTTTCTTCCAAGTAGCAAGTGTCTTTTAATTTCATGGCTGCAGTCACTATCTGCACTGGTTTTGGAGCCCAAAAAAATAAAGTCTCTCACTGTTTCCACTGTTTCCCCATCTGTTTGCCATGAAGTGATGGGACTAGATGCCATGATCTTCGTTTTCTGAATGTTGAGTTTTAAGCCAACTTTTTAACTCTCATCTTTCACTTTCATCAAGAGGCTTTTTAGTTCCTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCGGCAATCTTGATTCTAGCTTGTGCTTCATCCAGCCCAGGTTTCTCATGATGTACTCTGCATATAAGTTAAATAAGCAGGGTGACAATATACAGCTTTGACATGCTCTTTCCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGACCTGCATACAGACATAAAAGATGTGGGCTCAATCCCTGGATGGGGGAAGATCCCTGGGAGAAGGAGATGGCAATCCACTCCAGTATTCTTGCCTGGGAAATCCCATGAACAGAGGAGCCTGGCAGGCTACAGTACATGGGGTTACAAAGAGTTGAACTCGACTTAGTAAATCACCACCATACTTTATTTATCATGATCCAGTTGAGAAAATTCCAGGCTGAGAGTCTACACAATTACTCAACCTTCAGTCCATTCTCCATCACTAAAGCATAGACCATTCACCAAAGTCAGTGCCATCCCATACGTTTGTTCAGTGCTTTATATTTTCAAATGCTGCTGGTTACAGTATTTCATTTGATCCTCATAGTCACAACATGGAATAGGGCAAGGGGACATCATCATCACCATCTTAACATCATCCTCATCTTAACTCTAGAGTTAAGAAAACTCTGAAGCTCAGAGCAAATTCATTATTCAGCCCAGACCAGCAAGCCCAGGTCCACGTGTGTGCTCAGTCACTTCGAATGTGTCCGACTCTTTGCAACCCCATGGACTGTGTAGCACACCAGGCTCCCCTGTCCTGGAGATTCTCCAGGCAAGAATACTGGAATGCATTGCCATTTCCTCCTCCAGGGGATTGTCCTGACCCAGGGATGAAACCCACGTCTCTGATGTCTCCTGCATTGGCAGGAGGTTTCTTTGCCAAATCCAGGTCTCCTGACCCCCAAATACAGCACACAGTTCAATACATCACCCTTCCAGTCCTATCAGATACATTTAAACTATCAGCCAGTGGCTTACCCTAAACATCCAGTGACACTATATGGATGTGTCCCCAGGAAAACAGACCTCCTAGACTAATAGAGGACAGAACCCACAGCTGAGGTCAGGTTAGCAGCACATTTACAAAGGCACTGAGCTGCTCTGGGCCTAGGGAGACTGTTCAGTCACTGCTGTTTCATCTCTTCCAG
Seq C2 exon
CCTGCCCTGGAGGCCCAGATACCCCATGTAATAACCGGGGTATCTGCCTGGATCCGTACTCACCCAGCAGACAGTGTCAATGCAACAGCGGCTTCAACGGGACAACATGTGAGCTGTGCTGGCCGGGGAGATTCGGGCCTGACTGCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010:ENSBTAT00000007896:55
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF079748=EGF_2=WD(100=70.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]