GgaINT0112660 @ galGal4
Intron Retention
Gene
ENSGALG00000012751 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr1:54939038-54940065:-
Coord C1 exon
chr1:54939942-54940065
Coord A exon
chr1:54939188-54939941
Coord C2 exon
chr1:54939038-54939187
Length
754 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
CCTTTTTTTTAACCTTTCAGCTT
3' ss Score
9.63
Exon sequences
Seq C1 exon
GAAGGGATCTACCGGTGCACGTATGATTCCTACGGGCTACGGAGGGATGGCTGCCGCAGGAACTGCTCCATGGTCATCCACACGGCCAAGTGCTGCAAGGGGTACTTCGGGCCCGACTGCCAAG
Seq A exon
GTAGGGCAGCACCCAGTGAGCAGGACAGGAAGGCCAGTGCTTCTCTGGGGAAATAGTTGGAAAGAGGAGGGAATAAAAGCATCCCTGCAGCAATAGCTGCAGTATTTTCCATGAGGAGCGTGCTGTGCTCTGGAGGAACGGGCACCTGTGGCTTAACAGCTATAGAAATGTGAACTGAGTGAGCTAAGATCATAGAATCATTTGAGTTGGAAGAGATCTTTAAAGACCATCTAGTCCAGCTCCCCTGCAATGAACAGGGACATTTACAGATAGATCAGGGTACCCAGAACCCCTCCAGCCTGACCTTGGATGGGGCATCCACCACTTCTCTGGGCAACATATTCCAGTGCAGACACTAATGATCTGCGTGCTCCTTCACATGCCAGCACCTACCAGTGCTACAGAGTCAGCCTGGACTTGGGCCAGGGCCGGGAAGTGCTGCTCACCACTGGCACAAGCATATCCTGAATGAGTGGGCTGTAGGTAACAGCATCTGAGGCCGGGAAGGTGCACAGCACCTTTCTGACAGGATTTGTAGAAGCACGTCAAGGACCTCAGAGCATGAAACTTGCTGTCAAAGCTGTCATAGCTGCTTGTACAAACCCGAACAGAAATTCATTTATGGGCAATATTTCTGTTCTAGATTCTACAAAACAGTTAATAATGAACAGTGGCAATGAATAAACATGTGCTTGAGCTCAATATTCACTTTTTAAATTATTATTCTCTCGTTCCCTTTTTTTTAACCTTTCAG
Seq C2 exon
CTTGCCCAGGGGGTCCAGAGACACCATGCAATAGCCATGGCTACTGTGACGATGGCTACACTGGGACAGGAGAGTGCCACTGCTATAGTGGCTTCAACGGGACTTCATGTGAGCTGTGCTTGCCAGGCAGATATGGCTCCAGCTGCAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751:ENSGALT00000020806:55
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005319=Laminin_EGF=WD(100=84.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTACCGGTGCACGTATG
R:
GCTTGCAGCTGGAGCCATATC
Band lengths:
270-1024
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]