HsaINT0160073 @ hg38
Intron Retention
Gene
ENSG00000136011 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr12:103740630-103742554:+
Coord C1 exon
chr12:103740630-103740756
Coord A exon
chr12:103740757-103742404
Coord C2 exon
chr12:103742405-103742554
Length
1648 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
TGCTGTTTCATCTCTTCCAGCCT
3' ss Score
8.51
Exon sequences
Seq C1 exon
GGTGTGAAGCAGAAGTGTCTCTACAACCTGCCCTTCAAGAGGAACCTGGAAGGCTGCCGGGAGCGGTGCAGCCTGGTGATACAGATCCCCAGGTGCTGCAAGGGCTACTTCGGGCGAGACTGTCAGG
Seq A exon
GTGAGGGTGCCTCTTCCCCCCTCGCAACTCTAAAAGTGGTAATATGCTCCTGCTCGTTGTCCAGTCTTTGAATGTACCAAAATTATAGGGGGATGGGGGAAACACTGCTAATAATGATTCCCAGACCCCAGAACTCTGAAGAGTTGTGTATCATTCCTTCTACTTTGGCATATTTTTTTTATCGAGTTGAGATCCTGCTGTGCATATATTGTAATTGTGTGTCTGCTTTTTCCCTTGACATTACAGCATAGACATTTATTATGGTGCTAAATACACCGTATTTCATTTTTGATGCTGTGCAACATGATTTCCATGATATTGATAAGCATGTTTAAAGACTTTGATGTGACTCTCCCTTGGCAGGTGATGTACTGACACAGTATGTATGGGCCATAATTTCCTGAGCGCACCCCTGTCCCTGGTAGAGGATGTATAGCATTGGCTCCCTCTGTTACCTCATCAGGAAAGGGCTCCTTGCCAAAGCACATTTGGGCCCATTCTGAAACCCCTGTGTTAACTTCTAGCCAACAATACATCAACAGGTGCACGTAACAAATGCCTCAAAAGCACTATCTGCTACATGTTGTTCTAAGTAGGCACATTTATTGAGTTTTATTGAGTGCTTTTTCCCATACATATCAAAACATTTAATCTGGGCAACAACCCCTAGGGAGTAGGTTCCATTGTTGTCTTCCCCTCCCCACTGACTTTTTTTGAGAGAGGGTCTCACTCTGTTACCCAGGCTGGAGTACAGTGGCAGGACCACAGCTCACTACAGTCTCAACCCTCTGGGCTCAAGTGATCTTCTCACCTCAGCCTCTCAAGTAGCTGGGACTACAGGCACATGCCACAAGACTCAGCTAATTTTTTTGTATTTTTCATAGGCTGGGTTTTCGCCATGTTGCCCAGGCTGGTCTCAAACTCCTGAGCTCAAGCAGTCCATCCATCTTGGCCTCCCAAAGTGCTAGGATTACAGGCGTGAGCCGCCGTGCCTGGCCTGTTGACCCCATTTTGTAAATGAGAAAACAGAGGCACAGAGAGGACAAGAAGTAAACCCAAGGTCCCACTGGTCTGTCTTCAGCAGCTGTGATTTTTACTAGCATGCATACTCCATTCATCATAATCTCACTGAGAATACTCTGGGTTGAGAGCCCCCATGACCACCCAGCTCCACCCTCCATCACTAAAGTGTGGACCATTCATGAAAATCAGTATCATTCTAATATTTGTTCAGTGCTTTATATTTTCAAAATGTTCTCAGTTATAATGCCTCATTTGATCTTCACAATAACAACATGGGTATAGGTCAAGCAGACACTGTATCATCATTATTATCATCATCATTTAGATCTAAGAAAACAAAAGCTCAGAGCAAGTTCATTACTCAACCCAGATATCCTCAAATCCAGTGCACAAACCCCCAAATACAGTGCACAGTTCAGTGTATCACCCTGCCAAGACAGAATCATATCAGATACCATAAAGTTCATGTCCCATAGGCCAGTGACGTGCCTTAAATATCCACTGACACTGAAGGCGATGGTCCCTCTGGGCTAACAGAAGTCAGATGCCACAGCACATTTACAAAGGTGCTGAGCTGCTCTGGCTTTGGGAGACTGTTGAGTCACTGCTGTTTCATCTCTTCCAG
Seq C2 exon
CCTGCCCTGGAGGACCAGATGCCCCGTGTAATAACCGGGGTGTCTGCCTTGATCAGTACTCGGCCACCGGAGAGTGTAAATGCAACACCGGCTTCAATGGGACGGCGTGTGAGATGTGCTGGCCGGGGAGATTCGGGCCTGATTGTCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136011:ENST00000388887:55
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF079748=EGF_2=WD(100=70.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTGAAGCAGAAGTGTCTCT
R:
GACAATCAGGCCCGAATCTCC
Band lengths:
274-1922
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains