BtaINT0141881 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67775383-67778879:+
Coord C1 exon
chr5:67775383-67775523
Coord A exon
chr5:67775524-67778771
Coord C2 exon
chr5:67778772-67778879
Length
3248 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGA
5' ss Score
6.69
3' ss Seq
CCCTCTTTTCACCTCCTTAGGAG
3' ss Score
10.47
Exon sequences
Seq C1 exon
ACCCTGTCTGGGCGGGACATAGAGCACCACCTCTCCAACATCAACATCTTTTTTTACAATGACCTTGTCAATGGTACCATCGTGCACACGAGGCTGGGAAGCCAGCTGCTCATCACCTCCAGCCAGGACCAGCGCCAACTG
Seq A exon
GTATGAAAAGTCTTCTGGGCTTATTGGGAGAAATGGAGATAATAAATGCAAAGTTTCTAGCATAGAGTAGGTGCTTAATAGATGGCAACGCTTATAATGTGAAAGAAAACTCTAAAGCTACAGTAAGATGGTACTGGCTGAACACCAGAACACACCATACTGACTGTCAGGCAGCCCCTACTCCTTGAGCACTAAGCCCCTGGTGACCGCCAGCCCCAGAAGCTGATAATGAGGACCTATAAATGAAACCATTCTAAAGCTGTCTGATTCTCTGCCTTTATTTCTGTCAGATTTTCAGCCTATCCCAGGTATTAACACGTGAGCCTTGAAGTCAAATGACCTTAGTATGTCTGCCGCCCACTAGCTCTAGGACTTTAGGTAACTTGTCTGAACTTCTCTGGGTCCCAATTTCCTCATCTGAAAGACAGGGGTGTTGGTGATGTGTTGATGATGGCGATAGCAGTGATGATGCTTATGATGGTAACAGTGAAATTATTTTGATAATGGTGGTGTTGATAATTGCAATGACGATGGTGGGGATGATGGTGGTGGTTGTGATATTAGAAGTGGTGATAGTGGTGGTGGTAACATGACCATGATGTTCAAATCAGAGGCTTCTAAAGTATTCTTTCAACTGAAGTCTAGTTGATTTACATGTTGTATTAGTTTTAGGAGCACAGCAAGATGATTCAGTTTTTTATAGATATATTCAGGTATATACGTATTTTCAGGTTCTTTTCCTATATAAGTTATTACAAAATATTGACCCTCTGACCAATTGGTGGCTCAGACAATAGCACAGGGAACTATATAGTTCCTGTGAGAAGGAACCTTGGAGAAGGGAATGGCTACCCACTCCAGTATTTTTGCCTGGTGAATTCCATGGACAGAGAAGCCTGGCAGGCTACAGTCTGTGGGGTCACAAAGAGTCAGACACAACTGACACTTTTTTCACATTATGTATGTTAATCCTGTACTCCTAATCTATCCCTCCTCCCACCTTTCCATTTTGTTAACCATTCAGTTCATTTCAGTCGTTCAGTCGCATCCAACTCTTTGCAATCCCATGAACCGCAGCACGCCAGGCTTCCCTGTCCATCACCAACTGCCGGAGTCTACCAATATCCATGTCCATTGAGTCGGTGATGCCATCCAACCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCTCAATCTTTCCCAACATCAGGGTCTTTTCAAATGAGTCAGCTCTTCGCATCAGGTGGCCAAAGTATTGGAGTTTCAGCTTCAACATCAGTCCTTCCAATGAACACCCAGGACGGACCTTTAGGATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCAGCGCTCAGCTTTCTTCACAGTCCAACTCTCACATCCATACATGACCACTGGAAAAACCATAGCCTTGACTAGACAGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTAAATATGCTGTCAAATTTTAACCATAAGTTTACAGAAATAGTCTATGAGTCTATTTCTGTTTTGGAGACAAGTTCATCTTTTTCTTTTAGATTCCATATATGACACATTCAAAATTTACCTTTCTGACTTACTAAGATAATCTGGGTCCATCCATGTTGCTGCAGATGGCACTATTTCATTCTTTTTATGGCTGAGTAATAGTCCATTGTTTATATGTACCACATCTTCTTTATTCATTCATCTGTTGATGCTCATTTAAGTGGCTTCCAAGTCTTGGCTACTGTAATAGTGCTACCATAAACATTAGGCTGCATGTATCATTTGGAATTATGGTTTTCTCTAGCAATTTGCCCAAGAGTGGGGTTGCAAGATCATGTGGTTGCTCTAATTTTAGTATTTTGAGGAAACTCCATACTGTTCTCCATAGTTGTTGCGCCAATTTATATTCCCACCAGCACTGTAGGAGGGTTCCCTTTTTTGCACACCCTCAACAGCATTAATAATTATTTGTAGACTTTTTGATGATGGCCATTCTCACTGGTGTGAAGTGATACCTCATTGTGGTTTTGTCAGATCATATGCTTTTATGGAGATTCAGTGATTCAGGGATTTTGACATGTGATAATGGTATCTGACATGTAGCAAGGGCTAAATGAATATTTTTTATAAACACTGAGTATTTTTTAAATTTTATTTAGTTATTTTTGGCTGCACTGGGTCTTCGTTGCTGCACATGGGCTTCTCATTGCAGTGGCTTCTCTTGTTGCAGAGCATGGGCTCTGGGGCACACAGGCTTCAGCAATTATGGTGTATGGGCTCAGTATTTGTGGCTTGCAGGCTCTAGGGCACGGGTTCAGTAATTGTGGCACCTGGGTCCAGTTGCTCCAAGGCACGTGGGATCTTCCTGGGCCAGGGATCGAACCTGCGTCCCCTGCACTGGAAGGTGGACTGACTTCTAATCATTGGACCACCAGGGAAGCCCTAATGAATACTTTTAATACTTACCTAATAAATGATCTTTATTATTGAAGATCAGTACTTTAGACCAGTACTTCTCAAACTTTAACAGGCACTTAAATCACTTATGAGTTTGTTAAAATGCATATTGTAATTCAGCAGGTGGGTTGTGGGGCCCCAGGTTCTGCATTTCTAATCAATTCCCGGGTGTCTGCCCACACCACAAGCCAGTGGCTCACACTTTGATTAGCGAGGAATTAGCTCACTTAACATCCCTTTCTTGTGTGGTGTGCCCACACCACAAGCCAGTGGCTCACACTTTGATTAGCGAGGAATTAGCTCACTTAACATCCCTTTCTTGTGTGGTGTGATGTTCACAGCAGTGGGTCTGGAATTGGGGCATGGGGTTTGCCACCTACTACCTATGTGATCTTGGTATGTGTGATCACGAACTATGTGATCACACCATTTTCCTTCTGACCCCTCATCTGTTAAACAAGAGGGCTGGATAGAATGACCTCCTGGGTTCTCTGCAGCCCAGAACAGTTTGTTGGCACAAGAACTACTAATGTACTGTTCTGGGCTGTCCAGAGGGCGAGCACAAGCCCCATACTGCCCATCAGTGAGGATGGGCCTGAAACCCAGGCTCCCGGACCTCAGGGAAACTGGACAACTTTCTTCCATGGAAGGGCTGCTGCTGCTGCTGCTAAGTCTGCCCACATGGAAAGAAAGAATCAGATAGTCAGAGATATCTGATAGACAGCCCTCTTTTCACCTCCTTAG
Seq C2 exon
GAGACCAGGTTCGTGGATGGAAGAGCCATTCTGCAGTGGGACATCTTTGCCTCCAATGGAATTATTCATGTCATTTCCAAGCCTTTAAAAGCTCCCTCTATCCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010:ENSBTAT00000007896:65
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(39.0=100)
A:
NA
C2:
PF0246917=Fasciclin=PD(26.3=86.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]