RnoINT0144395 @ rn6
Intron Retention
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27374558-27375962:-
Coord C1 exon
chr7:27375822-27375962
Coord A exon
chr7:27374666-27375821
Coord C2 exon
chr7:27374558-27374665
Length
1156 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGG
5' ss Score
4.99
3' ss Seq
CACGCTCTCTCGGTTCCCAGGAG
3' ss Score
10.04
Exon sequences
Seq C1 exon
AGCCTGTCTGGCCGGGACATTGAGCACCACCTCACTAATGTCAACGTCTCCTTTTACAATGACCTTGTCAATGGTACCTTTCTGAGGACTATGCTGGGAAGCCAACTGCTCATTACCTCCAGCCAGGACCAGCTCCACCAA
Seq A exon
GTATGGAAAGTCCTCTGGGTTTATTGAGAGAACTAAAAAAAAAAAAAAAAAAAAAAAAAAATACGTGCCAAGCTCCAGGCCTGAGTAGACACGTGACCGATACCAGCTGTCCTAACATGAAACTTTAAATCCACACGTCAAGGGGGTTATCAGTGCAAACCATGGCTATGACATTAAATACTCACAGGCCACCCCAGAGCCTGGGGCATACGCTGGTCTTGGGATCTGAGAAATGAGTACTCGCTATGAAACTGCTTTGCTTTGCTTTGGATTTTTTGAGACAGGGTTTCTCTATATTTCCCTCATTGCCCTGCCTGTCCCAGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCACAGAGATCTGTCTGCCTCTGCCTCCTGAGTGCTGGGATAAAAGACATCACCCAGCCGTCACCCAGCCAAAGAAAATAAACTATTTTGAAGATGCTTTGTTTGCTACCTTTGGGTCAGTTTGTTATCCTATCTCAAGCATTAACACTTGAGCTCCCGAGTCAGAGGACCCTGGGATGACCCCCTGTCTCTTGTTAGCTGCCCATCTTCTCTGAGCTCAGTTTCTTCATCTGATAACTGGGGACAAGGGTGAGACTGTTAATGATGACGGTGGTGGCAGTGATGGTTGTGGTATTGGAGACCACGGTGACTGTGAACTCTAATCCTTAGACTGTCCGGGTCCAGTCCTCCAGAGTTTGTAATGTGGAGACATCGTGCCTGTCAGGATAGTCCTAGGTGGCAGTGCTTTAGACGAGTCCCGCCCCCACCCCATCAACATCTGTGCGTATCTGAGTCTGAAGCCTGTTAGGACGTGGCTGTGACTCCACGGGTAGGACACGGCCTCACTCCCACCTACACCACCAGCTAGTGCTTGCAAGACGTTTAACACCTCTCTAGAGGTGTGGTGTGACCCACGCCAGAGCCTCAGGGCCTACTGCTCAGGTGCTCTTGGGCAAGCCATTTTCCCTCTGGTAGCTTATCAGTCACATGGAGGTCCCTGCAGCCCCTCAGATCAGCTTGTTTGGTGGCGCCAAGCCAATGGGTGGTTGGGTGGAAGCCTAGGCTCTTAGGCCTGAGAAGCCAAATGGAAAACCTTCCTGCGTGGGCAGCAGATCTCATTCACGCTCTCTCGGTTCCCAG
Seq C2 exon
GAGACCAGGTTTGTGGATGGAAGATCCATTCTGCAGTGGGACATCATCGCCGCCAATGGAATCCTCCATATTATTTCTGAACCTTTGAGAGCTCCTCCCACGGCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948:ENSRNOT00000059538:74
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(38.3=100)
A:
NA
C2:
PF0246917=Fasciclin=PD(25.8=86.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCTGGCCGGGACATTGA
R:
TGGGAGGAGCTCTCAAAGGTT
Band lengths:
238-1394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]