DreINT0156765 @ danRer10
Intron Retention
Gene
ENSDARG00000045748 | stab2
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10762838-10763309:+
Coord C1 exon
chr4:10762838-10762987
Coord A exon
chr4:10762988-10763060
Coord C2 exon
chr4:10763061-10763309
Length
73 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
ACAAACACTGCTTGTCTCAGACC
3' ss Score
4.08
Exon sequences
Seq C1 exon
ACTTTAAGTGGCAGAGACATAGAGCACCATCTCCTGGATGGGAGGGCTTTAATACTGCAGGCCCTTATTAACGTCACTCATGTCCGAACACGACTGGGCTCCAGTCTGACCATCACCGGTGTGCCTGACCTCCAGAACCCTCAAAAAATG
Seq A exon
GTGAGAATATCTGCAACTCGCATCCATTATGTCAACACATTCGACTCACATTGACAAACACTGCTTGTCTCAG
Seq C2 exon
ACCTCCTCAGGATACATCAACGACCGGTATGTCATAGACTCCAACATTTTTGCATCCAACGGGGTGATCCACGTTCTGCAGGGCCCTCTGAAAGCGCCTCCACCTCCAACTCCCTCCTTCCACCCGGCTCATCAGGCTGGGTTGGGCATCGGCGTCCTGGGGCTCATCATTCTCATCGTAGTGGCTGGATTCGTGGGATACAATTTCTACACACATAAAACAAAGCCATTCCAGTTCCACTATTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748:ENSDART00000136000:65
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.193
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(38.3=100)
A:
NA
C2:
PF0246917=Fasciclin=PD(24.2=37.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTTTAATACTGCAGGCCC
R:
TCACCCCGTTGGATGCAAAAA
Band lengths:
174-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]