BtaINT0142441 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005589 | STK19
Description
serine/threonine-protein kinase 19 [Source:RefSeq peptide;Acc:NP_001091466]
Coordinates
chr23:27206123-27206573:-
Coord C1 exon
chr23:27206414-27206573
Coord A exon
chr23:27206260-27206413
Coord C2 exon
chr23:27206123-27206259
Length
154 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
GACTCGGTCTCTCCGCCCAGGAT
3' ss Score
7.19
Exon sequences
Seq C1 exon
TCGTGGTCTCTTTCCTCAACAGCTTTCTACTTCTTCCCCGCCGCGAAAAGATCCCGGGATATGAGCCGGAAGAGGCATCGCCTGGTCCCGGAGACGTTTGGGTTGAAGAGGCGGCGGGAACTGGGGGATGTAGAGGCAGATCCTTTGCGGGGCGAGTCAG
Seq A exon
GTAACCATGGCAACCCCGGGGCGAGGCTAAAGACCCCAGCTGGCAGCAGCCTCACCTCTGGTAACCCTGTATGTTGAGACAACAGCGCCCCAGTGTGGTATCCCCGCTTCCCCCGCCTCAGTTCACGTCGCAGTGACTCGGTCTCTCCGCCCAG
Seq C2 exon
GATCTGCGCGAGAGGCAGTCGCAGAGATAGTGCGGCTGTTCCCGCGAGTACTGTTTGAGGATGCGCTACCCCCCATCGCGCTGAGGAGCCAGGTGTACAGCCTCGTACCGGACCGAACCGTGGCTGACCGGCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005589:ENSBTAT00000007341:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF104944=Stk19=PU(20.3=95.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCTACTTCTTCCCCGCC
R:
GGTACGAGGCTGTACACCTGG
Band lengths:
248-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]