MmuINT0154062 @ mm10
Intron Retention
Gene
ENSMUSG00000061207 | Stk19
Description
serine/threonine kinase 19 [Source:MGI Symbol;Acc:MGI:1860085]
Coordinates
chr17:34836430-34836945:-
Coord C1 exon
chr17:34836777-34836945
Coord A exon
chr17:34836567-34836776
Coord C2 exon
chr17:34836430-34836566
Length
210 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
ACGCGCTTGCTCCACCACAGGCT
3' ss Score
6.34
Exon sequences
Seq C1 exon
GTCGTCATTATTCTGTGCCGGAAGACGCGGTCTTCGGGACTCCTTTCCCGGAATCCTGAAATCCGGGTTATGAATCGCAAGAGACGGCTCCTGGCGTCTGAGGCTTTTGGGGTGAAGCGGAGGCGGGCGCCGGGGCCCGTGAGAGCGGATCCTTTAAGAACAAGAGCAG
Seq A exon
GTAACCATGGCAACCTGGGCGCGGAAAGCCCGAGGGTATCCACCCTTGGAGGAGGGGGGGGAGGAGGAGGAGGAGGAGGAGGACCTAGGGTAGTAACCATGGCAACCCAGGCGCTGGGCAGCGACTCTGAGGGCTGGGGCGTCCGAACCTCCGCGCTGTCTCCACCCTCGCTCTCCACCCGGACCTGACCACGCGCTTGCTCCACCACAG
Seq C2 exon
GCTCGGCGCGCGAGGCCATCGAGGAGCTCGTGAAGCTGTTTCCCCGGGGGCTGTTCGAGGATGCGCTGCCGCCCATCGCGCTGAGGAGCCAAGTGTACAGTCTGGTGCCAGACCGGACGGTGGCCGACCTACAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061207:ENSMUST00000077477:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=PU(2.2=14.7)
A:
NA
C2:
PF104944=Stk19=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTCTGTGCCGGAAGACGC
R:
CAGTTGTAGGTCGGCCAC
Band lengths:
299-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types