HsaINT1043192 @ hg38
Intron Retention
Gene
ENSG00000204344 | STK19
Description
serine/threonine kinase 19 [Source:HGNC Symbol;Acc:HGNC:11398]
Coordinates
chr6:31972302-31972757:+
Coord C1 exon
chr6:31972302-31972511
Coord A exon
chr6:31972512-31972620
Coord C2 exon
chr6:31972621-31972757
Length
109 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
GAGCCGATTTATCTGCCCAGGGT
3' ss Score
3.83
Exon sequences
Seq C1 exon
GAGGGACGCCCGGGGAGACCGTACGTCACTGCTCTGCGCCGGAAGACCCTATTTTCAGGTTCTCTTCCCTCCATTCCTACCCCTTCCCCGGTACCATAAAATCCCGGGATATGAGCTGGAAGAGGCATCACCTGATCCCGGAGACCTTTGGAGTTAAGAGGCGGCGGAAGCGAGGGCCTGTGGAGTCGGATCCTCTTCGGGGTGAGCCAG
Seq A exon
GTAACCATGGCAACCCCGGGGGTGGGGCCTCGCTTCCGGTAGCCGAGAGTTTTGTTAGAACCGCGTCCCCGCCCCAGTTCCCTGTCCGTGAGCCGATTTATCTGCCCAG
Seq C2 exon
GGTCGGCGCGCGCGGCTGTCTCAGAACTCATGCAGCTGTTCCCGCGAGGCCTGTTTGAGGACGCGCTGCCGCCCATCGTGCTGAGGAGCCAGGTGTACAGCCTTGTGCCTGACAGGACCGTGGCCGACCGGCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204344:ENST00000375331:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF104944=Stk19=PU(0.5=1.4)
A:
NA
C2:
PF104944=Stk19=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATTCCTACCCCTTCCCC
R:
CACAAGGCTGTACACCTGGC
Band lengths:
249-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains