RnoINT0004977 @ rn6
Intron Retention
Gene
ENSRNOG00000048929 | AABR07044389.1
Description
NA
Coordinates
chr20:4516674-4517128:-
Coord C1 exon
chr20:4516982-4517128
Coord A exon
chr20:4516811-4516981
Coord C2 exon
chr20:4516674-4516810
Length
171 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
CCGCGCTCGCTCCCCGACAGGTT
3' ss Score
8.57
Exon sequences
Seq C1 exon
AGACGCTATGTTCAGGAGTTCTTTCCCGGAACCCTGAAATTCGGGCTATGAATCGTAAGAGACGTCTCCTGGCGTCTGAGGTTTTTGGAGTGAAGCGACGGCGGGTGCCGGGGCCCGTGAGAGCGGATCCTCTAAGGGCGGAAGCAG
Seq A exon
GTAACCATGGCAACCCGGGCGTGGCGGGCCATAGGGTACCCACCCTTAGAGGAGGGGGAGGAGGAAAAGGTCCTGGGGTGAGTAACCATGACAACCCAGGCGTGGGGCTCGGGCGTCAGATTCTCTGAGTGCTCTCCACCCGGACCTGACCCCGCGCTCGCTCCCCGACAG
Seq C2 exon
GTTCGGCACGCGAGGCCATCGAAGAGCTCGTGCAGCTGTTCCCACGGGGGCTGTTCGAGGACGCGCTGCCGCCCATCGCGCTGAGGACTCAAGTGTACAGTCTGGTGCCGGACAGGACGGTGGCCGACCTGCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048929:ENSRNOT00000072446:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCTTTCCCGGAACCCTG
R:
CGGCACCAGACTGTACACTTG
Band lengths:
242-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]