BtaINT0143048 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003525 | STXBP1
Description
Bos taurus syntaxin binding protein 1 (STXBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_174619]
Coordinates
chr11:98386832-98395251:+
Coord C1 exon
chr11:98386832-98386957
Coord A exon
chr11:98386958-98393289
Coord C2 exon
chr11:98393290-98395251
Length
6332 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAAA
5' ss Score
1.18
3' ss Seq
GGTGTTTTCTGCCTCCCCAGGAT
3' ss Score
8.75
Exon sequences
Seq C1 exon
GTTCTACTCATATTCTCACTCCCACCAAATTTCTCATGGACCTGAGACACCCCGACTTCCGGGAGTCCTCTAGGGTATCTTTTGAGGATCAGGCTCCAACAATGGAGTGAGAGCCAAAGAAACAAA
Seq A exon
GTAAAAGCAGCTTATTACACAAAAGAAACTCTTCCACTCTGAAGGGTTTTCTTTGATTTATTCCGTCACTCTTTCTTTTCTTTTTATTTTTTTTTCCCTTTTCAGTTTATTATTTATTTGATTTTCTTTTAACGAGAAAATGCTTGCAGTTCTTCACACCGATTGAAAATGTGTCCTGATGCTGCCCTTCACCAACCCTGCCCGAGCGCCGCTGGGCTCTGGCTTGCCAGCTCGCTCACGCCACAGGTCACCTGCTGCTCAGACAGCTGCAGCCCCCTGAGCTTTAAATGATCACAACCGCTATGCACAGCCCTCCAGAGGGGGCTGGACATGGAGGGATGCTGCAGGCACGGCACCTAAGCCTGCTGGCTGTGGGGTGAATTCCTGATGATGAGGAAGGCTTGGCACAGGGCGCCGGAACAGACCCCCAGTCTGTGGTAGTTAAATGTGTCAATACATTTTGCCCAGGTCAGGCACTTATCCCAAGGAACAATTCCTAAGGGGTGATGGGGTCGTAAGCCACCTGGTTTGTGGTGAACTCCAGCCACCAGTGGAAAGAGCTGGTGTCTCCTGGTCTAGGGAAAGCGGCACTTCCTAGTCATTTGCTCTTTCGGTAATTGCTTTTAATTCCCCTGTGGGTCCTTCCAAGACTTGAGAAGCATACCCCTCTCTGCAGCTGGAGTCTCCTAGTCAGATTGAGAGCCTTTGGGTAGAAATCTGTTCTCAACACTATGTGCTGTTTTGAAGAGCGTATCCTCTCCCACGAGCTCATGCCTTTATCTCAGTTACCTGGGAACCTGTTGTGGGTTTGGTAGGTTATCCAGGTTTTATTCTTGCCCTTGAGAGAGTAAGAGTTCCTTGCTCTCTCTTTTCCACTCTTCTATCGTGCTGGGAACCTCCCCAACCTGTTCAGACGGCAGACTGGCCCCAAAGGCCTCACTGCAGCATGCGTCGTTTCTCAGCTTCACTACACACTGTGATGAGGCCACATCTTGTGTGCATGCCCTCCTCTACTCCACTGACCACGGACCCTGGAAATGTCCCCTCCCCCACCCCCACCCCCAGGCTGAGATGTGCCCTGTGAGCCACCTGTGAGTGAGTAGCAGACAGACCAGGACTCTAGCCCCAGCTTGGCCACAAGCACCTGTGTGAGTGGGGGAGGTTACTCCCACTGGGCTACAGAACACAGGGAGGCTGGATCGCAGAGCCCCTCGGACTCTGGCCATCTGTGATGCCGTCGTTCAGTTGGAGACTCAAACCAGGCAGCCCTGCCCCGCTCTCTGGCAAGCCCTCCCTCCATTCTCTGGGGAGTGAACATCAGAACCCTGGCTGGGTAATGTCAGAAGTATGCTTGTTTATTTTATAAAGAATGAGCTCCATCTATGAAGGACCTGCTCTAAAGGTTGGCCCTTGAGGCGGGGTTGTTCATCCCTCTTTCTTTGCCTTGGCGGAGAGATAGCTGCCCCGGGGCAGTAGGGAGGTGAGGAGCAGCAAGGGCCTGCAAGCCAGGACAGTGAGGCTGGCTGTGGCGCTGGGCTATCTGCCATCCTGCCCAGGCTGCCTTTGCCTAGAAAACGAGGCCAGTGGGTGATGAATAAAAGCAAGTGTTAAAAAAAAAAAGTCATCCTTAAGAAGCACCTTGATAGGATGGTAATCAGAGAGATCTGGTTCTCATGCAGATGGCAGGTAGGTGGACAGCATTTGCTGTATTTCGAGACTTCTCAAAGGACATTTGGAGAAGGCAGTGGCATCCCACTCCAATACGCTTGCCTGGAAAATCCCATGGGTGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGCTAAGAGTCGCACACGACTGAGTGACTTTGCTTTCAGTTTTCACTTTCACGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTACCTGGAGAATCCCAGGGACGGGGGAGCCTGTTGGGCTTCCGTCTATGGGGTCGCACAGAGCCGGACACTACTGAAGTGACTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGAGATGCTTTATTGGGCAGCGCTGTATTTTAGAGTTCAGTTAAGAAAAATCGAGGCACAGAGTCCTCATCCCTGCTACTGCTAAGTCACTTCAGTCGTGTCCGACTCTGTGCAACCCCATAGATGGCAGCCCACCAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAAGAACGCTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAGTGAAGTCGCTTAGTCATGTCCGACTCTTAGTGACCCCATGGACTTCAGCCTACTAGGCTCCTCCATCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCCAAGTCCTCATCCCAGGGAAGTTAAAAAGCAGATGAATGTCCAGCCTGCCCACTTCTGTTGTAATTGTCCAAGTGACTAAAGCCTAGAACAATACAGGGTGTTGCAGAGGCAGGGTGGTGTCCCACACATCAGTGTGAGCAGAAACTTAGCTTTTAGAGATGGGTTTAAATGGCAACCCACTCCGGTACCCTTGCCTGGAAAATCCCATGGACTGAGGAGCCTGGTAATCTATAGTCCATGGGGTCGCAAAGAGTCGACTGAACGACTTCACTTTAACTTTCATTCAATTTTTAAGGGCTTCCCAGGTGGCACCGGAGAAGGCAATGGCACCCCACTCCAGTACTTTTGCCTGGAAAATCCCATGGATGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGCTAGAGTCAGACACAACTGAGCGACTTCCCCTTCCCTTTCCCCTTTCCCTGCTCAGCAGTGAACGTGGGCCCACGAGTGCTCTCCTGGGCTGTGTGTGTGGATGCCAGTGTTGTGCTCCACCCTCCTGGCCCCTCCCTCTTCTCGCCCCTCCTCCTTCTGGCCCTTCCCTCTCCTCCTGGCCCCTCCCTCTTCTCGCCCCTCCTCCTTCTGGCCCTTCCCTCTCCTCCTGGCCCCTCCCTCTTCTCGCCCCTCCTTCTGGCCCTTCCCTCTCCTCCTGGCCCCTCCCTCTTCTCGCCCCTCCTTCTGGCCCTTCCCTCTCCTCCTGGCCCCTCCCTCTCCTCCTGACCCCTTTCTGTCCTGGAGCTGAGGCCTGCTCCACCTGGCCCTGGCCAAAGGGGGAAGGCGTGGATAACTAAGCATATAGATGCCACCAAGTCTCGGCTCAGTCCCCACTAATCAATCCATCATTCCTCCCAACCAAGAAATGAAATATTTTGATCAGCTCTGCACCTTGGTGCTGTGGATGGTTTATGTTAAAAGGATTGACTATTAGCGAATGTCCAGAAAACGGTCGGAAGCTAATGAAAGGAGCTGCAAGGCCGACTTAGACCTATTACACAGCACTTACAAGGGGAAGAAGTTTTTTTGTTTTGTTTTTATGTTGAACACTTTGCTTTATTTTAGATCAAGGTCAGATAAGTTCCACTTTTTCAATGGGACTCAGATTTGAATCTGAATTCAGAGCTGACCCAGTGCCCAGCTGCTGTTTGAACATTGCCTTCCACATCCCCTCCCAGGGCAGGAGGCCACAGGGCCCCCAGAATCAACAGCAGAGGCATGGCTTCTAGGCCTGGCTGTGCCACCAACATGCCCCACCGGCATGAGCATCTTTTTCTCATCTGTAGGATGCCGGTGGGCAAGGCCACTGTCTTCCCACACCTGGCAGATCATCTCACTCACCTGGGCTGCTCTTAAATGTGCAGTTTAAACCTACTATTCCCTGACACTGCCCTCAATAGTCTGAGTCTGCAGGATTGATTCGGGCAATTCCAGAACCAGCTGGATCAGCTGATCTGTCAGAAGTCTTCTGGTTTTCAGATGCTGTCAGTGAGGAGGAAGGATTTTGTCCTGGCAGAGCTCACTGTGGCCACAAGCTTTGACAGTCTTTGGATGACTTTGTTTTGAAGATCACCGTTCACATTTCAGATTTGCGGTTATGTAGGATAAGGGGGACCCTCGGAGTGGTTCTAGAGGGCCTGCATGGTCGGCCACCTTTGGGTTCAAGTGAGAACGTTTGCAGTGTTTGTGGTGCTGAGAAGTTTGACCAGGGTATTAAGTTTGATCAGCGATATCGCTGATTGCGTGGCAGGAATGGGTCTCAGGTGATTTCAGATTAACACCAGCTGGTCTGCATCCTTTAAAGGGACAGGAGCATGCCTGTGTGAGGAGCCCTAGAGGCCTCACTGGTTACCTGATACTCTTGGTCCTGGCTCAGATCGTAAGGAATCTGCCTGCTAATGCAGGAGACCTGGGTTTCATCCATGGGTCAAGGAAATCCCCTTGGAGACAGGAATGGCAGCCCACTCCAGTATTCTTGCCTGGGGAATCCCATGGACAGAGGAGCCCGGAGGGCTACAGTCCATGGGGTCGCAAAGAGTAGGACACGACAGAACGACTAACACTTTCACTTGGTCCTGGATGTTGTCTGTTTTCAGTGAAAGACTGGGAGCACCAGACGATCAGATAATATCCAGTTCTAAAGAATGAATTCCTTCACCTCTTTTTGGCCTCCCCCCAGCCCTGAATCTGCACGGAAGCAAGGTTAGGAAGCACGATGGTCTAGACATCTGATCAGAGGCCTTTTGATTCCCCTTTAAATCCAGTCTTTCCTCTTGTTTCCTGGAATCCAGTGGATGGCTGTTGGGGAGGACGTTAAGGATGGTTTTTCTGGCATGTGCATAGCCTAGGAAGCCCCCAAGGTAATCCCAGCCTAGAGTTCCCAGCAGCCATCTCTCAGCTGTAGACACCTAAACTGCATCGAGCTGAGACTTGGAGACTTTCATTCTGCCAGTGGTCCTGGTCAGAATTTGGTAACATTTATTCCTATTACCTCATCTAGGGATGAGGCCTTTGACCTTTAGGACCTGCAGGAAGATTCATAAGGTCACAGAAATGAGTGTCTTCGAGGGAGACAGGGACACCCTGTTGAAACTGGTGTCACCTTTGCCAAAGGAGCCTTGAGTCTGCAGAAAGAGTCAGCTTCGGGCACAGGGCTGGCACGGGCTGCACGCTCGCTCGGGACATCACGCTCGGCCCCTCAGGGAAGCAGCCAGGAAGGGACTGGTTCCTTACTCAGAGCAGTGGCTGGGGCTTGAGCTGCAGGGAAGTCTCTCACACCAGAGACGGCTTCTCCAGTGTTCTCCTGGTCTGCAGTGCCAGCCGTCGGGTCAGCTGCGAAAAGTAGTGGTCAAAGGCATACAGACCCTGCTATTTGGAATCACTCCCCAGGATCCCACCAAAGCCTTCTTCTGCCCGCCTTCAGGGTGGAAATCTGGCCTCCTGTGGTTTCTGGTCCCCTCTTCCCAGGAAGGCCTGCACCCTTGCCCGCATCTCCAGGGAGGCACATTTTCAAGGACGGGTCTCTTTTGTTCAGTTCTCTCCCACCGGGATCTCTTTCTTTGAAGCCTTCTGCTGCATGCGTGCAGGCGTCATGCTCACACACCAGTCACTTCTGTTGTTTTTGAGTAAGTCCATGTCCAAACCACACGATCCATGCATCTTTTTTTACTGCACTTATTAGATCTCTCTTTATGAAAAAGGACTTCATTTATTTTTATTTTTTTTATTTTTGCAGTAGAATTATATCTAATTCCATTAGCTTAAATTTTTGCAAGCATTTCTAACCTCTTACAATGTGCGGGTCTCTGCAAGGTAAGGCCTCAGGTTCCCCGGCCCTACCCCTTTCACACCTGAGGTCCCTCCCACCATGAAGCCCCAGCCAGCTGGCTCCCAGAGCACGGTGGCTTCCCCTGGGTGCTCTGTCCACCCCCTTCCTTCCGACCTGGACCTCTCTTTCCACACACAGCCCCCCTACGAACCGCTGCCCTGTTCACCCCCCTCTTCCCCGCCATGTGGTTCGGCACTTCTCTCCCTGGCTTCACCTTGAGTTCAGGAGAGAATTAGAAGGATGGCTGCCCTGTCCCCTGGGAGACAGCACTGAGCCCAGCTGGAGAGACAGCACCTTCCTCGGTACAGCCCGGGGGACCCTGCCTGAGCCAGAGGAGGTGTTCTGTTCACCCATGACCCCCAAATGTCTCCTGGGCCAGTTGTGATGTGGCCCCAAACCCCAGCCCCCACCCCCCTCTCTGTGTCCACTCGACCGAGGCCAGGGGAGGGGAGGGGGCGGCTGCAGCTGTGGGAATGGACAAGGGCAGGGGAGGGGGAAAGTGTTTGAAACCAGAGGCGGCAAGCTCACAGGTGTTTTCTGCCTCCCCAG
Seq C2 exon
GATCCACGCACATTCTCACCCCACAGAAACTGCTGGACACGCTGAAGAAACTGAATAAAACAGATGAAGAAATAAGCAGTTAAAAAATAAGCCGCCCCTCCAAACAAAACCGAACCCTCTCCCCGAAGTGCTCGCAGCCCCGACCGCCTTGGTCCCTTTGCTGACCCCTCCTCCCTCTACCGCCTCCCCCAGCTCTGCACGCCCGGCCGGCACTGTCGCCGCTGCGTTCTCGTGTTTGGTGATGCCCTCTTCTTCTTGTTTGAAACAAAAGAATGCATTGTTTTTTGATTTTTTTTTCTTTAAGAGTCCCTTCTATGTGTATCCTGGAGGAGACGTTTGGGACGAGGGCCATGCTGCCATCAGGTTCCTGGAACCGTTTAGGGTGAATGGACACCTCCTCCCCATTAGTCAGGATTTTATGACCTTGTACATAGCCCAGCGTGACGTGTGCACATTTGCTTGCATATGGGAAGGTAGACGTTTGGGTGTTTTTAAGAACCCATTTGGGGTCGCTCCTGTTCGTGTTGGGAATCACTGAGCTTTCCATTCTTGGAGTATGTCAAACTGAGGGTGTCTTTTCTCTTCACTCCAGTTCCTCCCCCTCGGTGCCGGCTCTCATTCACGTGAGCTTGGAAGTGAAGCTCAGGTGACATCTCGAGAGGTTTGCACTGGAGCCAGCCTCTGCTCTCTCCCCCCAAGGGGCTCGCTCCCCCCATCCCCCGGTGCTGGGGGTGGGGGGTAGGGGTTGGGCCACAGGAAGTCGGGCTGGGTGCCCTGTCTCAGCGCCCTCCCTGGCCACAGCCACAGCGCTGTGGTCCTGTCTGCGGTCTATCACCGTGCCTGGATGAGAGAGGAGCAGGCTTCCACTGGGGACCTGGGTCTCCAGTTAGACCTGCTCCTTCAGACCCCATCCTTCCCCAGGCATCACCCCCGACACCACCACCAGAGCTCCTCTTTCTTAGTGAGGTCAGCTTGGGTAGAGCTTATGGCTCAGCAACGGACTAGGACTGGGAGGGTCCTGCAGGCTCCTGGTTCAGAGGTCCCTTTCCTGTCCGTGCCCCTGAGGCTTCAAACTACACGAAGAGTAGCCTGCTGGCTTTACACAGACCCCAATCGCACCCCAGATCATCCTCTGTTTAAGATACTCCCTAATACTTTATTTTGTGTAGTGTGGGGTCATTTGTCATCATGCTTGTAAGAAAAAAACAATCATTTTACTCTGTATAAAGATGTAGCTGTATAAAACTTAGCTGTTGATGCAGAAATCAAAGAGGCCAATGCAGGAAGGATGTCTCCTCATCCTCAGGACTCAGCGGCTCGTTCTCCGGAAGGGAGCACACTCTTTTCTGCTGCTGCTGTGAACTATAACGACAGTGGAAGTCACAAAAAATGTCCCGCACCCACCCCCCACGCCCTTGAACCCCCCCCAGACCGTGTGTGTATATTACTGTCTTGTGGCATCGTCGTTGCAAATGTGTGTGTGCTAGTTCTCCGCTACCCCCTCCCCTTTCAGAATATATCCTCCGCCCGCCCGTTAGGTGCATCGTGGCGTTCTCTTCTCAAGGCTTTGAAATCTTCCCCCTTTGCACTCAGATTAGTTTTCAGGTCTGTGTCCCTGCCCCCCTGCCCTTCCTTACAAGATCTTATTTCCTTAGGACAGACTGTAAGGACCTGCCTTGGTTTCTTCCTGTTAAAACTGCTTGTTTTGTCCCCTTCCCTTGACCAAACGACGCTCATGCTTCAGGACCTTGTTTGTCCAACACGTTGGTTTTCCTTTCTCTGTTATTTATATAAAAAATAATTTATCAAAAGGATATTTTAAAAAAAGCTAGTCTGTCTTGAAACTTGTTTACCTTGAAATTATCAGAATCTCAGTGTTTGAAAGTATTGAAGCACAAACGTGTATCATCTCTGTACCGTTCTGTACTAAAGCACTCGAGTCTAATAAAGAAATAAATCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003525:ENSBTAT00000056141:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.074
Domain overlap (PFAM):
C1:
PF0099518=Sec1=PD(2.5=37.8)
A:
NA
C2:
PF0099518=Sec1=PD(2.5=50.0)
Main Inclusion Isoform:
ENSBTAT00000004589fB6832
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development