HsaINT0161393 @ hg38
Intron Retention
Gene
ENSG00000136854 | STXBP1
Description
syntaxin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11444]
Coordinates
chr9:127684368-127692716:+
Coord C1 exon
chr9:127684368-127684493
Coord A exon
chr9:127684494-127690774
Coord C2 exon
chr9:127690775-127692716
Length
6281 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAAA
5' ss Score
1.18
3' ss Seq
GTCTTCTCTGCCTCCTCCAGGAT
3' ss Score
11.08
Exon sequences
Seq C1 exon
GTTCTACTCACATTCTTACTCCCACCAAATTTCTCATGGACCTGAGACACCCCGACTTCAGGGAGTCCTCTAGGGTATCTTTTGAGGATCAGGCTCCAACAATGGAGTGAGAGCCAAAGAAACAAA
Seq A exon
GTAAAAGCAGCTTATTACAGAAAAGAAACTCTTCCACTCTGAAGGGCTTTCTTTGATTATTCCGTCACTCTTTTTCTTTATTTCTTCCTTTTTAGTTTATTATTTATTTGATTTTGTTTCAACAAGAAAATGCTTGCAGTTCTCAACACCGATTGAAAATGTGTCCAGTGCTGCCCTCACAGCCCTGCCATGAACCCTCTGGGCTCTGACCTGCTGGCTCACCCATGCCTTGGGTTCCGCACTGCTTAGTCAGACGCCTGCAGGCTGCTGGGTGGAAACTAAAAATGATAATGACTGCTGTGAACAGTTGTCAGAGAGGGAGCTGAAGTTTTGGGGGATGCCTGAGGCACAGTGCCCAACCCTGCTGGTCTGGGATGAATTTGTGGCCCCCACAAGGAATGTAGAGTGTCCTGGTTGTGCTGGGTGTGGGGGTCTGAGAGCGAGGCCAGTGGACATTCAGGGAACACCATGTCCAGGAAGGCAGGCGGTGGTGGAGATGGCTGGTCGTGAGGGAAGCTTGGCAGGCAATGTAGAATAGACCCCAGGTCAGTGGCAGCTGGACGGATGGTGTGAATACCTTTTTCCTAGGACAGGCACTTCTCAAGGAATAAGTTAAAAGGGGTAATTGGGTCACAAGCCGCCATCTGCTTGGGGAACCCCAATCTTTAGCGGGAAGAGCTTTTGTTTCATGTTCCTCTGCAGGAAACGGCACTTAACAGTCATTTGCTCTTTTACTAATTACTTTTAATTCTGTGGATCCTTTCAAGAGTTGAGTAGTCATACCCCTCTCTCTCCCACTGAAGTCCCTTGGTAAGGTCTGAGAGCCTGTCAGTAGTAATGTATTTTTTTTTTTTTGAGACGGGGTCTCGCTATATTGCCCATGCTGGAGTGCAGTGGCTCTTCACAGGTGTGATCACAACACACTGCAGCCTCAAACTCCTGGCCTCAAGAGATCCTCCTATCTCAGCCTCCTGAGTAGCTGGCACCATAGGCCCATACCACTGTGCCCAGCATAAACCTATTATTAATGCTCTGTGTGGTTTTAGAGAGCATCTTCTGTCTCCCACCAAGCTTGTTACCCAGAACCTATTGTCTGCTTAGTAGACTATCCAAATTTTATTTTATTTATTTATTTTTATTTTTATTTATTATTATTATTATTTTTTTTGAGATAGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCATGATCTCAGCTCACCACAACCTCTGCCTCCTGGGTTCAAGTGATCCTCCTGCCTTAGTCTCCCAGGTTGCTGGGATTACAGGCATGCGCCACCACACCTGGCTAATTTTTTTTTTTGTATTTTTAGTAGGGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCGCGCCCAGCCGACTATCCAAATTTTGATCTTCAAAACTGTCCTCATTCCCTCCTCTCTCTTTCCATCCTTCAGATACGATAGAACCTTCTATGTGTTTAAATGGCAGCCTTCCATCATCACATCAGTGACTCCTTAGCTTGTTACATATTCTTTCATGAGGCCATATTTTGTGTACCTGACTTTGTGTATATCATTGACAATGGACCCTGGAAAAGCCCCTTCACCTGAGCTGAGATGTGGCCCAGTGAGTCACAGAGCATGAGTCCCCTGTGAGCATTGGAGAGAGACCTGGACTCAGAGCCAGGAGGACTGGCCTCTACTCCAGCTACTCCATGGGCACCTGTGTGGCTGTGGGAAGATACCCTCGCTCTCTGGCCATAGCATAGGAGCACAGGGAGGGTGGATCGTGTGCCCCCAGGCACGCAGGACCTCTGACATTCTGTATATTCAGTGATTACGATTTGTGCCTCAAACCATGCAGTCCTGCTCACTCTCTCACTCTCTGGTGATCCTCAGGGGAATGGCCCTTCAGAACCTTGGCTAGGTGACATCAGAAGCTGCTTGTGTATGTAAGGAAAATGGGGCTTCCTCCTAAGGTAGGAACAGGAGGCTACGCTGTTTATCTCCTCCTCTCTCCCTTCCTTGATATGAATGTCAGGGCAGCAGTGTGCTAAGGAACTGAAAGTAGTTGGGAACCCAGAAAGTGGACCTGGTTATAGCCCTAGGCTATAGCTCCCATCCTGCCTGGGCTGGCCCTCCCTAGAAAGCAAGGCCAGTAGGTGGTGAATAAAAGCCATTGTTTTAAAAAAAATCATTCCTTAGAAGCACTGATAGGTTGTAAATCAGAGACATCTGGTTCTGTGTGCAGACTGCAGGTAGGTGGATGGATTTGCTGCAGTATGTATTTTAAGACTTCTAGAAAGACAAATGTTCAGTCGAGTCTGCAGCAATAGCAGACCACTTGCAGGATCTGAAAGAGCACAGACTCAAACTGCAAAGGCTCCTGCTAGGATGAGTTCTGAGCTTCCCTGCTTCAGAACAAGCTTCTCCTTTGCAGAGTATTTTCCTTTGCGTTATATTTGCTCAGCAGAGGTCTCAGCTGCCATCAAAACAAAGAGAACGTAAACAGACTCCGTATATTCCTGGCTTCTGAAATCATTTGCTGAGTGGTGTTGGGTTTTAGAGCATTCAGTTAAGCAAGGCACAGAGCCCTAATACCAGTGAGGTCAGAAAGCAGATTAAGGTCTGACTTGCCCTCTTCTGTTGTGATCGTCCAGGTGACCAAAGTACAGGACAGTGCAGACTGTCAGAAAACTTGAGTGTCCTAAAGACCAGTATCATGGCAGCATATCTTTTGTGTCTTTTTTTCTTTCTTTCTTTTGAGTCAGGGTTTCACTCTGTTACCCAGGCTGGAGTGCAGTGGCATGATTTTAGCTCACTTCAGCCTGGACCTTCTGGGTTCAAGTGATCCTTCCACCTCAGCTCACCTAGTAGCTGGGACCACAGGCATGCGCCACCATGCCTGGCTAATTGTTTTGTATTTTTGGTAGAGACTGGGTTTCACCACGTTGCCCAGGCTGGTCTTGAACTCCTGAGCTCAAGTTATCCCCCAGCCTCGGCCTACCAAGTGCTGGGATTACAGGCATGAGCCACTGCACCTGGCCCAACATATCTTTTAGGAGAGGATGAGTTTTCCTGCAGCAAATGAGAGGGTTCTCAGCAGACACCGTGCATGGGTGATGGTGCCATGCCCTGTCTTCCCAGCTCCTCTCCCTCCTGTAGCTGACGCTGGCTCCCCCGAGGTCAGGGTTAACCAACAACTCTCACTAAATCCTCACCAGTCATCCCTCCACATTGTCTAAAAAATGAAATCTTTTGATTAGATTTTCACCTCTCTGCTCTGGTTAGTTTATGATAAAAGTACTCTTCTTTGGGGAATGCCCAAGAGACTGTGAGAAGCAAATGTGAGAGAGCTGAAGACTGGATCAAGTCTTTGCAGTACATGGGGGCCACTTGGGAGAGAGTTGGTGGGTTTTTATATTGATTATTTTGCTTCATTCCAGATTGGGGTCAGGTATGTTTCATTTTTCTTTGGGACTCAGATTTGAATCTGAATTCAGAGCCCACCTATTGCCTGGCTGCTATTCAAGCATCCACCTGCCCATCCCCTCCCCTCCCAGGGGCCACAGGGTCCCGAGAATCAAGAGCCTGGAGGCACTGCTTCTGGACCTGTCTGTGCCACCCACCCTGAGCAAGCACCTGACTGCTCTGGCCTTCACGTGTCCCATGTGTAGGATGAGAAGGGTGGGCCGGATCACAGTTTTCCAAACCTGGCTAATGATCATACTCACCTGGGCTGCTCTTTAAATGTACACATTTTCTGGCGCCGCCCTGCATATTCTGAGTCAGTAGGTCTGCTTCAGCCAAACTCAAGAATGATTGGACCAGCTAGCCTGCAAGAACACTTTTGGTTTTCAGATTCTGTCCGTGTAGAAAGAAGGATTTTGTCCCATCAGAGCTTGCGGTGTCTGGCCCACAGCTTTGAAAACATGTAGACAGTCATGTAGATGGGCCTCAACTTAGTTTTTAGAGACCACTGTTTACATTTCATAATCGTCCAGTTATAGGGACTAAATAGGACCCTCAGAGCAATAGGGCCCACTTGCTGCTTTATTCTGGAAAACCAACATGGTCAGCCATCTGTGGATTCAAAATGAGAACTGTGCAAAATGTGGATTATGGACTCACTCAGCTTAATTTGCAATGTTTATGGTGGTGAAAAGCTTGACCAATTTATTAAAACAACACAGATGACTGACTTTGAAGAATTGGCTTTCTGATGATCAGCATTTACACCAGCTAGTCTGGTCCCCTTAAAGAAACCACGTAGGTGAAGGCCTAGGCCACAGCCTGTTGCTGAGGGTCTTCGAGGCTTCACTGATTGTCTCCAATACTCAGTCCTAGAATTATTGTTCTTCAGTCAAGACTGGGAGCAATGAATGGTCAGTGATTAAATAATATCAGAGACTTCTAGTGCATTAATTCCCTAACCTCTCTTTGGCCTCTCCCAAATCCTAGATTTACATATCAGCAAAGATAGGGAGGACTTTGGAATCAGCATCTGATCAGAGGAACCCCTTCGGATGCCTCCTTTAAAATGAGTCTGCCCTCTTATTTCCTGGAGTCATTTGGATGGCTAAGGAGGGCCTTGGGGACATTTTCTCTGGCACGTGCGCTCCTTGCTGTTGCTTGTAACGAGGAAGCTCCCAAGCGAATCCTCACGCTCTGCAGGACAGGCTGTCTTTCAGCATCTGGACACGTGGGCTACATGGAGTTGCAATTTGGAGGGCCCCCATCCTGGCAATGGTTCACTCTTCAGAGTTTGGGGCAAGCCTTGTAATATGCGTCCTTTCTCCTCATTTGTACAGCAGCCTTTGGCCTCTTTTAGGACTAGCAGGAGGAGTGGTGAGGTCACAGAAATGAGTGGACTTCAGGGGAAAGGAGTGCTATAAAAAAGCCCAGGGACACACTCCTGAAACCTGCATCGCATTTGCTGAAGGGGCCTCAGGTCTGCAGAATGATGAGTCAGCTTTCCAGCGCAGGGCCCCTACAGGCTGCGTGCACAGGGCATCATGCCGAGGACAAGTTCCTCACTCAGCTGGGAGTGGGCAGCTGGGGCCTGAACTGCAGAGAAAGGGATGTTGGAAGAACAGAGACGGCTTTCCAAGTTTCTGCTAGTCTGGAGTGACCAGGAAGGGCTGCAGTTCCAGCAGTCTTCGGTCAGCTGAGCGAGTAGTTAGTGGTCAAAGGCATAGGGACCCTGGTATTGGAGTCATGCCCAGTGAGCCAGCCAAAGCCTTCTTTTGCCTGCCCTTGGGGTGGAAATCCAGCATCCGGTGGTTTCCGCTCCCCTGCTCCCATGAAGGCCCATTCCTTTGCCACGTCTCCAGGGAGGCACATTTTCAAGTACGTGTCTCTTTTGTTCAGTTCTTGTCTCCCACCAGGACCTTTCTTTGAAGCACACTGCTGCATGCGTGCAGGCCTCATGCTCACCCACACACCACCCCGGTCACCTCTGTTCTGTTTAAGTCCATGTCCAAACCACACGACCCATGCATCTTTTTTTACTGCACTTACTAGATCTCTCTCTCTCTCCTTATGACAAAGACTTTCATTTATTTTTATTTTTATTTTTGCAGTAGAAGTATATCTAATTCCATTAGCTTAAATTTTTGCAAGCATTTCTAATCTCTTACAATACGCGGTCTCTGCAAGGTAAGGCCTCAGGTCCCCTGGCCCTTTCCCTCTCACACCTGAGGTCCCACCCACCAGGGCAGTACCAACTGGCTGGCTCCCAGAGGTCAGTGGATTCTCCCAGGGGGCTTTGCCTATCAACTTCCTCTCCCAGGCACCATGCTTTCCACACATGGTCCCCCTACCAACTCTGGCCCCATTTTCAGCCTTTCCCTGCCTTGCCATGTTTGGAATTTCTCTCCCTGGCTTCACCTGGAGTTTAAGAGTGAATTAGAAACGCAGCTGCCCATCACCTGCAGATGGCTCTGCACCCTGATGGTGAGGCAGCTCGTTCCTTGGTGCAGCCTGGGACCCTGCCTGAGCCAGAGGATGTGTTTTGTTTATCCACAGCCCCCAAATATCTCCCAGGCCTATTGCGACGGGACCCCAACCCCAATTCTGACTCCCCTCCCTGCTTCCACTATACCCAGACCAGGGTTGGGGAGGGGGGTGGGTGCAGATCTGGGAATCGAGAAGCGCAGGAAAGGAAGTGTTGGAAACCAGAACTGGCAAGCTCACTGTCTTCTCTGCCTCCTCCAG
Seq C2 exon
GATCCACACACATCCTCACCCCACAGAAACTGCTGGACACACTGAAGAAACTGAATAAAACAGATGAAGAAATAAGCAGTTAAAAAAATAAGTCGCCCCTCCAAAACACGCCCCCATCCCACAGCGCTCCGCAGCTTCCCACCACCGCCCGCCTCAGTTCCTTTGCGTCTGTTGCCTCCCCAGCCCTGCACGCCCTGGCTGGCACTGTTGCCGCTGCATTCTCGTGTTCAGTGATGCCCTCTTCTTGTTTGAAACAAAAGAAAATAATGCATTGTGTTTTTTAAAAAGAGTATCTTATACATGTATCCTAAAAAGAGAAGCTCATGTGCAATTGGTGCACAGCAGGAGAAATTTCTGGACTGTTAGGATGAATGGACGCCTTCTCCCCGTTATTTAAGATTTGTGACCTTGTACATAACCCTGGGTGACGTGCACATTGCTTGGGTATGGAACGGTAGAAATTTGGGTGTTTTTAAAACCTTGTTTGGGGTTGTTCCTGTCCTTGTTGAGAATCATAGAGATGTCTGTGTTCTTGGAGTATTTCACACTGAGGACTAATCTGCTATCTTCATTCCAGTCCCTACCCCTCAGTGCCTGCTCTCATCCAAATAACCTGGGAGGTGACAATCAGGATATCTCAGGAGGTCCAAGGTGGAACAGACCTCTTTGCCTTTCCCAGCGTCTCATACCCCCGGTAGTGCAGCTGTGGGTGGAGGCTGGGGTGTCTGCACGAAGTCAGGCCAGCGTCCTCCTCCACAGCCTGTCACTGCCCCCTCCCCAGCCTGTGTCCACAGTGCTGTGATCCCGAGGGAAGTCCTCCAGTCTAAGTCACAGTGCCCTGACAGGTGAGAAGCAAACTCCCGCTGGAAGCCTCCATCTCTTTGGAAAAACAGTTAGTCTGGAGCCTGTGGCCCAGGCCCTTCTGTCCCCAGGCATCATCCCAACAGCTCATTTTCCCTAGTCCGCCTTCGTTCAAGGGTCAGGAATGGACCAGAACAGATGGGTTCTGGAGGCCCCTGAACAGAGGGCTATGGCTGTGGAGAAGGTTCTTGGCCCGTTGGACTCACACAGACCCTGTACCCTCTCGGCAAGCATCTTCAGTCAGATTATCCTCAGTTTCAGATACTTCATAATACCTTGTGTTGTGTGGGGTCATACATCATCGTGTTTGTAAGAGAAGATGGTCATTTTATTCTCTGTATAAAACTTAGCTCTAAAGCAGAAACTAAAGCAGCAAATGCAGGAAGGCTGTCTCGCCATCCTCAAGACTCAGCAGCTCTCATTCTCCAGTGGTGAGCACACCATTTGTGCTGCTGCTGTTGTCGTGAAATATAATAACAGTGGAAGTCACAAAAATGTCCCCTGCCCAGCCCCCTCGCCGCCCTTGACCTCCTGCAGGCCATGTGTGTATTACTTGTCTAGTGATGTCCTCTCAAAGTGCTGTACGCGAGCTCGGCGCCACCTCCGCCTCCCTTTCAGAGCCTGCTCCCCGCCCTCTCTGCTCGCTGCATTGTGGTGTTCTCTTCTCAAGGCTTTGAAATCTCCCCTTGCACTGAGATTAGTCGTCAGATCTCTCCCCGTCTCCCTCCCAACTTATACGACCTGATTTCCTTAGGACGGAACCGCAGGCACCTGCGCCGGGCGTCTTACTCCCGCTGCTTGTTCTGTCCCCTCCCTCGGACCAAACAGTGCTCATGCTTCAGGACCTTGTTTGTCGAAGATGTTGGTTTCCCTTTCTCTGTTATTTATATAAAAATAATTTATCAAAAGGATATTTTAAAAAAGCTAGTCTGTCTTGAAACTTGTTTACCTTAAAATTATCAGAATCTCAGTGTTTGAAAGTACTGAAGCACAAACATATATCATCTCTGTACCATTCTGTACTAAAGCACTTGAGTCTAATAAATAAAGAAATCAGCACCCCTTCCCGGTGTCCAGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136854:ENST00000373302:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF0099518=Sec1=PD(14.3=37.8)
A:
NA
C2:
PF0099518=Sec1=PD(2.5=50.0)
Main Skipping Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains