BtaINT0143299 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002137 | SUGT1
Description
Bos taurus SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) (SUGT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046203]
Coordinates
chr12:11163368-11164807:-
Coord C1 exon
chr12:11164738-11164807
Coord A exon
chr12:11163432-11164737
Coord C2 exon
chr12:11163368-11163431
Length
1306 bp
Sequences
Splice sites
5' ss Seq
GGGGTAGGC
5' ss Score
5.3
3' ss Seq
TTTTTAATATGCTCATACAGGAT
3' ss Score
8.69
Exon sequences
Seq C1 exon
ATGCTGTTGCTGATGCAAAAAAATCCCTTGAACTTAATCCAAATAGTTCCACTGCTCTGCTGAGAAAGGG
Seq A exon
GTAGGCAGCAGCTACTCTTCCTGTGGGGTCTGGGCTAGATATGGTTAAATGGATGAATTGTAAGCTTTTTTTCCCCTCTCTTTAAAAAAAAAAAAAAATTATTGTAGTTGGAAGATAATTACTTTACAATATTGTAATGGTTTTTGCCATGCATCAGTATGAATCAGTCATAGGCATGCATGTGTCCCCTCATCCTGAACTTACCCTCCCTGTAAACTTTATGTAAATAGTAAACTCTGTGTTTATACATTTTATAGCTGAGATAGGATTCAATTTTTGGTATATTTTATACTTTTATTGTATTAACTGCAGTATGCAATGAGATACACAGTTTGTATGTGTGTATATATAGTTTAAAATAGTGATGATTGAAGTAACTGCAGGGTATAGATGAAACTGAATGATTTCAAATCCCTTTTTTGTGTCATCATTTGAAACCTACTGTGTTTAACTGACGAGAGAACATCTATTTCTTGCCTAAGCTGTACAGACTACGCTTAAAGATGACTCTGTGTCTGTGTACTTTATATCCCAGCTTGTTTCTGTTAATAAGTGTAACTTTATTCTTTAAGAATCAAAAGCTTCTTTAATTCCTTAGTGTAACTATATTTTGGAATAAGCTGCTAAGTCACGTCAGTCGTGTCTGACTCTGTGCAACCCCATAAACGGCAGCCCACCAGGATGCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATGTTCTTCTCCAGTGCATGAAAGTGAAAAGTGAAAGTGAAGTCACTCAGTCGTGTCCTACTCTTAGCGACCCCATGGACTGCAGCCTACCAGGCTCCTCTGTCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCCATTGGAATAAGCAAGTATGTACAATTAAGAAATTCCTTCTGAAATGAGTTCCACATTTTTAATGGGAATTAGATGTTATGCTGGTGACTCAGATGGTAAAGAATCTGCCTGCAATGCAGGAGCCTGGGTTCAATCCCTGGGTGAGGAAGATCCCCTGGAGAAGAAAATGGCAACCCACTCCAGTATTCTTGCTTGCAAAATCCCATGAACAGAGGAGCCTGGCGGGCTACAGTTCATGGGGTTACAAAGAGTCAGACACCACTGAGCGACTGACACACACACAGATGTTAGAGTATTTTAGAACATCTGTTGGCTTGTTGACATGCTTAAGTTCTTTTAAAAGATGAGAAACTTTTTTTTTTAAGAAAGCTATGTTTCATGATCTTACATGTGTGTGCTTATTTTTAATATGCTCATACAG
Seq C2 exon
GATATGTGAATACCATGAAAAAAACTATGCTGCTGCTCTAGAAACTTTTACAGAAGGACAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002137:ENSBTAT00000002771:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(20.6=54.2),PF134141=TPR_11=PU(16.4=37.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development