RnoINT0145874 @ rn6
Intron Retention
Gene
ENSRNOG00000012594 | Sugt1
Description
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone [Source:RGD Symbol;Acc:1307550]
Coordinates
chr15:61880479-61881217:+
Coord C1 exon
chr15:61880479-61880548
Coord A exon
chr15:61880549-61881146
Coord C2 exon
chr15:61881147-61881217
Length
598 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGT
5' ss Score
8.34
3' ss Seq
TTTGTAATGCTCTCGCACAGAAT
3' ss Score
5.66
Exon sequences
Seq C1 exon
ATGGTATTGCCGATGTAAAGAAGTCTCTTGAACTCAATCCAAATAATTCTACTGCTCTTCTGAGGAAAGG
Seq A exon
GTATGTAATGTGCTGAGTTTGGACTATAGCCAGTAGGTGCTAATTGGTTGAGTAAATTTGTAATATTTATACATGTTGTAATCTTACAATACTAACTTATGCTAATACTAGCATATGTTAACTGAAGTAAGGGATGACAGATGTATGATTTCTAAAGCAGGGGTGATGGAAATATCTGTAAAGTATGGATGGAGCCGACGGATGCTCTCTCAGCGAAGCTGGTGAGCTGTGTTTAATAATCAGCAAAACAAAGTCTACTTTGTGTGTCTTTGTTAGGCACTGTTGATTACCACTGATAAGCATGACTTATTTAACTGAGAACCTCATTCTTTTGCATAATTGTTGTGGCTTAGAACATATGGATATTTGGATATATTATACAGTTAAAATCAGATTCTTCTGAAATGAGTATTAAAATTGAGTTTTAATGACCATTACACTGAATATTATAGTATCTTAAAAAAAAACCTCTGATTTATTAGCATAGAATTAAAGTAAATTCTCTTTCAATATATGAAAGTCAAATATTTTATTTAGAAAGAAGGTATTTTCTATGGTTTACCGTGTATATTAATTTGTTTGTAATGCTCTCGCACAG
Seq C2 exon
AATATGTGAATACTATGAAAAAGACTATGCTTCTGCTTTAGAAACATTTGCAGAAGGACAGAAATTAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012594:ENSRNOT00000017086:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(22.8=54.2)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]