MmuINT0154898 @ mm9
Intron Retention
Gene
ENSMUSG00000022024 | Sugt1
Description
SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1915205]
Coordinates
chr14:79996555-79997273:+
Coord C1 exon
chr14:79996555-79996624
Coord A exon
chr14:79996625-79997202
Coord C2 exon
chr14:79997203-79997273
Length
578 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGT
5' ss Score
8.34
3' ss Seq
TTTGTAATGTTCTCACACAGGAT
3' ss Score
8.16
Exon sequences
Seq C1 exon
ATGGTATTGCCGATGTAAAGAAGTCTCTTGAACTCAATCCAAATAATTGTACTGCTCTTCTGAGGAAAGG
Seq A exon
GTATGTAATGTGTTGGGTTTGGACTATAGCCAGTAGGTGTTGATTTGTTGAGTAAATATATTATACATGATGTAATCTTACAATACTAACTTATGTTAGTATGTTAACTCAAGTGTGGGATAACAGATGTCTGATGTTTAAAGCAGTGATGATTAAAATATCTGTAAAGTATGGGCGGAACTGACGATGCTCTCTGTCAGCAAAGCCGGTTAGCTGCATTTAATAATAAGCAAAAACTTAGTCTACTTTATGTGTAGTGTTAAGCACTGTTTATTATAACTGATAAGCATGGCTTTTTAACTGAGAACCCAATTCTTTTGCATGATTGTTTTGGCTTAGAACAAATGCATATATAGATATATTTATACAGTTAAACTCAGATTCCTTGTGAAATGAGTATGAAAATTGAGTTTTAATGACCCTTACACTAAATGTTACAGTATCTGAAAAAACTTAGTTTATTAGCATAGACTTGAAATAAATTCTTTCAGCATATGAAAGTCAAATATTTTATTTAGAAAGAAGTCTGTTTTCTATGATTTCATGTGTGTATATTAATTTGTAATGTTCTCACACAG
Seq C2 exon
GATATGTGAATACCATGAAAAAGACTACGCTTCTGCCTTAGAAACATTTGCAGAGGGACAGAAATTAGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022024-Sugt1:NM_026474:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(22.8=54.2),PF0771912=TPR_2=PU(20.6=29.2)
A:
NA
C2:
PF0771912=TPR_2=FE(70.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: