HsaINT0161633 @ hg38
Intron Retention
Gene
ENSG00000165416 | SUGT1
Description
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone [Source:HGNC Symbol;Acc:HGNC:16987]
Coordinates
chr13:52658399-52659249:+
Coord C1 exon
chr13:52658399-52658468
Coord A exon
chr13:52658469-52659178
Coord C2 exon
chr13:52659179-52659249
Length
710 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGC
5' ss Score
7.47
3' ss Seq
TTTTAAATATATTCATGCAGAAT
3' ss Score
6.54
Exon sequences
Seq C1 exon
TTGCTGTTGCTGATGCAAAGAAGTCTCTAGAACTCAATCCAAATAATTCCACTGCTATGCTGAGAAAAGG
Seq A exon
GTATGCAGTAGCTACTCTTCTTGTTGAGCTTGGTATAGATAGTAGGTATTTAATTTGTTGAATGAGTTCATTGCAAGCTTTATATAAGTTGTAAAATTCTGTATTTATACATTATATAGCAGAGATATGATTCAATTTTAAATACAACTTATAGTTCTATTATTTTGTTAACCAAAGTATGTGATAGGAGATCTGTACTTAGTAAATTTTAAAATAGTGATGATTGAAGTATTTGCAAGGTATAGATGAAACTGATAGATTTCACATTGCTTTTTTTTTTTTTTTTTTCAATCTTTTGGAATTTACTATATTTAATTGACTGGACAACATCCTATTCAGCAAAGCTGAATAGGCTACATTTAATGCTATGAAAGCGCTATATCTGTATACTTTATATCCCATCTTGTTTCTGTTGATAAGTATAACTATTCTTTAAGAAACTTCTTTAATTCCTTTGTATAATTATATTTTTGAGTAAGCAAGTCTGTACAATTAAAGTCAGATTCCTTCTGAAGTGAGTTCTAAAATTGAATTTTAGTAGGAATTGTACTAGATCTTAACAGTATATTAGAAAGTCTCTAGGTTTATTAACATACACTTAAAATAAATTTTTTCTTTCAACAGTAGAAAATACTAAGTTTTTTATTTAGAAAGAAGGTATTTTCCAGATTTTTTGTGTGTCTTAATTTGTTTTAAATATATTCATGCAG
Seq C2 exon
AATATGTGAATACCATGAAAAAAACTATGCTGCTGCCCTAGAAACTTTTACAGAAGGACAAAAATTAGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165416:ENST00000483074:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(22.8=54.2),PF134141=TPR_11=PU(17.0=37.5)
A:
NA
C2:
PF134141=TPR_11=FE(45.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains