GgaINT0106484 @ galGal4
Intron Retention
Gene
ENSGALG00000016946 | SUGT1
Description
suppressor of G2 allele of SKP1 homolog [Source:RefSeq peptide;Acc:NP_001025994]
Coordinates
chr1:165052878-165053375:-
Coord C1 exon
chr1:165053306-165053375
Coord A exon
chr1:165052949-165053305
Coord C2 exon
chr1:165052878-165052948
Length
357 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGT
5' ss Score
8.34
3' ss Seq
TTTTTCTTTCCTTGTGTCAGGTT
3' ss Score
10.25
Exon sequences
Seq C1 exon
ATGCAGTTGCAGATGCGAAGAAGTCCTTAGAGCTCAACCCCAGTAATGCTGTAGCACTTCTTAGGAAAGG
Seq A exon
GTATGTATCGTATGCTGTGCTCTGACAATATTCTGCTAATCTTTAGGGCAGTAACAGCATTTGGATTATTGCTCTATGCAAACTTCTTGCAAGACTGTGAATGAGGAAATTCCATGCCATGCTGCTTGTAACTCCTTTGTAATAAAGCTGTGGTTATAAGATAAAATAGATCTTTTGGTGTGGTTTGTTGTTTTCTTTGGAGGGAGGGGTGGTTCTGTTAACATCCTGACTATTCCAAAAACAGATTTCACAGGTGATTTAAATTCCAGCACATGTGGGGATGTTGTGATCTTCAGAATGTGGATTAGCTTAGAAAGTAATTGCAGTTTCCTTGTGGTTTTTCTTTCCTTGTGTCAG
Seq C2 exon
GTTAGGAGAATACCATATCAAAAACTATGCCTCTGCTTTAGAGTCTTTCAAAGAGGGACAGAAGTTGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016946:ENSGALT00000036497:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(19.7=54.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]