BtaINT0143745 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020243 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chr8:101594135-101596084:-
Coord C1 exon
chr8:101595989-101596084
Coord A exon
chr8:101594231-101595988
Coord C2 exon
chr8:101594135-101594230
Length
1758 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
CTTTTTGATCTCCTTTCTAGCGA
3' ss Score
9.16
Exon sequences
Seq C1 exon
CTGTCTGTCGATTCCCATGTCAGAATGGAGGGATCTGCCAACGCCCAAATGCTTGTTCCTGTCCAGATGGCTGGATGGGTCGCCTCTGTGAAGAGC
Seq A exon
GTGAGTCTGTCCTCATATCTTACAAATTGTGTCCTAAGATTTTACTTTGAGTTCCAATGGTTTGCCTGGAAGCTGTCAACTTAGGGGCATTACTAGGAACTGGCTTTACTAGTGGCAGGAATTTTCTTGCTTAAATCCCGTAACAGACCAGACAAAGGGCTGAGAGCATATCTACATATGTCATTTCATTGCAGAAGATCTAGAATATTACAGACCTTGAAAATACAGTTATCAAAATCCATCTAAGGCCATCTCCACCTGCCTACAGATTTCCAGGAACCTTCTTGGGAAGGAGCTTATAATAAAGGGTTTCCCAACCTTGGTCTCCCTTTATCTCAAGTCCATTTATCTTCTGTGCTGCTTCTTGCTACAGTTAGTGTAAATTCATGGCATTGCATAAAATTGTACTTTGCAGGTAAGATAGGGAGCCCATCATTCATTAAGAGTAGCTCTTTCCAATTAAAAAAGAATAAATTGGTACTCCAGTAGCTAGACAATGCTTGATACTTTAATACAGAATTTCAGTCCTCAGGAAAAAATACATTTAAATTTGAGTTTCCAGGAGAATGTGAAAAAGTGGCTTTAATTTTTTTAATGTCTAAACTGTACTTTGTTTCAAAATCTTTAAAATATATATACACATGGATAAATTTATTGGGAGTGTATTAATCACATTGAGTCATTAATATGATGGCCATTGGTCTATATCAGTTTTTCCTAAGGCCAGACATTTTATTAGAAATTCTGAAACTTTTTAAAGTGTAAGTATTTCAACTAATCAAGAAAAGAAAATATACAATGGAAATCAGTTTAGGATGCTAATTGCTCACCAAAGCAAGTATTCTCACGGTGATTCAGAAAGAAGAGAATTTTTCCTTCTTCTTCTCCCCAGTCCTACCTTCCTACTTAGGGCTTCCACGTGTGACCTACTAGAATGCCAAGGATCATCACAGGCCTGGCTTTGCTGAACATGTGCCTTTGATCAGTGCATTTGATCAGGGCTTCCCAGGCTTTCCTATGCTTACAGACAACCAGGGAGAGGGTCAATGCGGGTTCTGATTTGGTAGATCCAAGACAGGACCTGAGATTCTGCATTTCCAGCTAAGTCCTATGTAATGCCAATGTTTTGGTCTTGAGAACCATGCTTTGAATACCAAGTCAATAAACAGTCTCACTTCTTTTAAACAGATAACACCTCTTTACGGACCTCAGTGATTTCTAGTAGGAGAAATGATTGCCATGCAGAATGTCAGGGAGGCCAGATTCAGTCACCATTAGGCCTCAGCTCCAAGGAAATAAAGGGTGGCGGCTACTAAAGTGTTGCCCACACCAGCCCACGGAAGAGCTTATCTGACTGCCATTTTCACATTTAATTACAGCCAAGAAGAGAACCTCAAGGCAGCCAAACCCTCTTAGAGCATTTTATGTAATTTGTAATGGAAATTTGAAACGATAATGAATGAAAAGCATTCTGCTTATTTTGTGAAGAGAAAGCAAAGCGCTTAGCAGGCATCAATTTCAGTGTGTCCTCTCGGAAAGAGTGCACTTGGCTTTGGAGTCGTTACACGAGGCTAAGGGTCCAGATTGACTTTCTGGATTGTGTTTTCTCAATAATACTGATTAATAAACACAGCATATACGGGAAGGTTATTTAGTGGGTCATCTAAGGTTTTACTCCTCCTGGAAAATATCTTTGGAACACGCGATCATGTCTGAGTGTGTGGGTTTTGATCCAGTCCTTTTTGATCTCCTTTCTAG
Seq C2 exon
CGATCTGCATTCTTCCCTGTCTGAACGGCGGTCGCTGTGTGGCCCCTTATCAATGTGACTGCTCACCTGGCTGGACAGGGTCCCGCTGTCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020243:ENSBTAT00000001939:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PU(9.4=9.1)
A:
NA
C2:
PF0000822=EGF=PD(87.5=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGTCGATTCCCATGTCA
R:
CTGTATGACAGCGGGACCCT
Band lengths:
191-1949
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]