HsaINT0162183 @ hg19
Intron Retention
Gene
ENSG00000165124 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:15985]
Coordinates
chr9:113137648-113139646:-
Coord C1 exon
chr9:113139551-113139646
Coord A exon
chr9:113137744-113139550
Coord C2 exon
chr9:113137648-113137743
Length
1807 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
TTTTTTTTTTTTTTTTTTAGCAA
3' ss Score
10.42
Exon sequences
Seq C1 exon
CTGTCTGTCGATTTCCATGTCAGAATGGGGGCATCTGCCAACGCCCAAATGCTTGTTCCTGTCCAGAGGGCTGGATGGGGCGCCTCTGTGAAGAAC
Seq A exon
GTGAGTTGCTCTTCAGATCTTACTTTGAGTCCTGACAAATTGCCTGGATGCTCCCACCTGAGGGGAGTTACCAGGAAATGGTTGTACTGTTGGGAAGAATTCATTTGCTGTAAGTCCTTGTCCACACCAAACAGAGCACATATGTGTCAACAGGTTGCAGAAGATCTAGAATATTAATGACTTTGAAAATACTGTTATTAAGATCCATCTAAAGTCATTTTCACATGTTCCCTGGCACAAATTTGCAAAAGTCTTCTTGAGAAGGAGCTTGTTGTAAAGTCTCCAAGCTATCCTCTTCCCTTAACTCAAGGTCTACTATGTGCTATGTCAGTCATTGCTGCAGTTGGTATAAACGTGCACCACTGCAAAACATGTACTTTGCAGGTAATATTTGCAGCTCACCATTTCCTCTTTGTTGTTAAGAATAGTTTCTACTCATTAAGAAAATAAGAAAAGCTGGCACTCCTATATCCATACTTGGTAAATTAATATAGAATTTTGATCCTTATAGAAACAATTTGAAATTCCAGGGAGGTATGGATAGTGATGTTAAATTTTTAAATATCTCAACTACACTTTATTTCAATATCTTAAAATATATATAAGGATAAAATGGTTTCATATTTCAACAGGAGCAGTGTATGTAAACCATTAAGAGTGATTCATGTGATGGCCATTGGTCTATACCAGTTTTTCCTACAGGGCAGGAATTTTATAAGAGACTAAAATGTTTTAAGTGTGACTTTTTCAACTAATCTATAAAGGAAAATGTATGATGGAAATAAATTTAGGCTGCTAACAACTCACCAAAACAAGTATTCTCAAATGATTAAAAAAGAAGAGAAATCACACTTTTCTCTTCCAGCTCACCCCAATCATTCCATTTCACCTAGAGCTCCCAGACTTAGCCTGCCCTTATGTCAAGAGTCCAAAGACTTAGTAAGCATTGACTTTGGGGTACCCCACGACAGGTCTGGCTTGGCTGCCTTAGCTGGTCTGGCTCACTGAGCATGTGCCTGCCCTCCTTCATTATACCAGTGCTTCCCAAGCTTTGCTATGCATACAGATCATCTGGGAGATCAGCAGATCTGAGTTGGTACCTGATATCTGCATTGCTAACCAACTCCTAGGTGATGCAAAGACTATTGGGGTTAGGGAACTTGATTTTGGGGAGCAAAGCAACAAACTCACATCTTTTAAACAGACTATGCCTCTTTAAAGATTTCAGTGATTTCTAGGAGGAGGAATGATAGTCATGAACAGGGTTCGGGAGGCATCATTCAGTCACCGTCAGTCCTCAGCTTCTCGGAAATAAAGGGTGTGTTGTCCCATTGCTACCAAAATGTTGCAAACTCCAACCCTATGTTACAGCCTATCTGATTCCCATTCTCACATTTAGTTCAAGACAGGAAGAGCCTCAAGGCAGCCAAATCCTCTTAGAACATTTTATGTAATTTGTAATGGAAATTTGAAACTATAATAAATGGAGACCGTTCTGCTTATTTTGTGAAGAGTTAAAGCAAAGCACTTTGCAGACACTGATTACGGAGTGTCTTCACTGAAAGTGGATTTGGCCTTAAAGTCATTACATGTGGCTAAGAATCCAGGCTTACTTTCCTGATTGTATTTTCCCAATGATACTCATTAATAAGCAGAACACATGCAGGAAACTTATTTAGTGAGTCATATAAGGTTTCACTCCTGCAAAATGTTTTCTGAACCCTTGAACCTATCTAAGATGTGTACTTTGATCAACGCCATTTCAATCCCCCCTGCCTCCTTTTTTTTTTTTTTTTTTTTTTTTTAG
Seq C2 exon
CAATCTGCATTCTTCCCTGTCTGAACGGAGGTCGCTGTGTGGCCCCTTACCAGTGTGACTGCCCGCCTGGCTGGACGGGGTCTCGCTGTCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165124-SVEP1:NM_153366:45
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(90.3=84.8),PF0000822=EGF=PU(9.4=9.1)
A:
NA
C2:
PF0000822=EGF=PD(87.5=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGTCGATTTCCATGTCAGA
R:
CTGTATGACAGCGAGACCCCG
Band lengths:
191-1998
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)