GgaINT0062212 @ galGal4
Intron Retention
Gene
ENSGALG00000015721 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chrZ:66372955-66375152:-
Coord C1 exon
chrZ:66375057-66375152
Coord A exon
chrZ:66373051-66375056
Coord C2 exon
chrZ:66372955-66373050
Length
2006 bp
Sequences
Splice sites
5' ss Seq
AGCGTATGT
5' ss Score
6.12
3' ss Seq
TTCTCTTCCCTTCTCCTTAGCAA
3' ss Score
9.05
Exon sequences
Seq C1 exon
CTGTCTGTCGGTTCCCATGTCAGAATGGTGGAGTCTGTGAGCGACCAAATGCCTGCTCGTGTCCAGATGGCTGGATGGGTCGTCTCTGTGAAGAGC
Seq A exon
GTATGTATATCATCCTTCACGTGTTATTTATAAAGATGTTGTAGATAAGACAAGTGAATTTTCTGCTGTGAACTCAGTGCAAAAATTAAAGGTGTAGGAGCCAAAAACATAAAAATCACAGCTTTATTCTGCTTGACAAATTAGAATAGAAACGACTAAGCAATTTCTTGCTCTAGACAAAGGTCTATCCTTCGATACCTTGCAACAAAACACATTTTAATTGATGCAGGGCTGGCTTTTCCTGGCCTGGATCCCTATATAATTGTAGAACTGGATCTGTTCTGATTGTGAACAACCAAATCTGACTTCTGAGCCTGTCAGAAATTCTCTGGGTGATGCTGGAGGTGCTGGGTTTTGCCATATTTCCCATTTCCTCAGTAGTGGTCTTAACATGAGGAATTGGTGACATCTGAACCCTTCATGCTGGCAGTACCACCATAGCGCATACTCAGCCTTCTGTGTGTAACATTTTCAGCTGGAGGGGGTTGAGCCCTGTGCCTGGCAGAGTTGTGTTTGGTATGCTACGATTGATTTCCTTACCTTAACATTAGTAACAATACTTAATGTGTTCTTCATGACCAAAAGACAATTTTTATGCCCCTAGACATTTTAATGTGTCATCCCAGTTCTGACCTTGTTTTCATATACAAGGAAAATGAGCAGACAGCTGACAAGGTAGATTACAGTTCATGCAGACATAGGCAGTGGCCCTTTTTTTTTTTTCCCTCTTTACTTTGACATAGGCATTGTGAAGCAAGGTAAAGGCTTCCCACAGTTAGTTACTGCCACCTTGATTCTGCAGTGTTGCTTGTCCCTTAAGGTACATCAGTGAGTAGAAGAGATAGGTTTAGTCTTTGGTTCTGAGGGCCTCTTCTTTTGAGTGCTAGCATTGAGCACTGATTTGTCAGGGCCAGGCCACAGGTGAGGCTGCAGAGCTTTGAAAGAATTCGGTCATACATACAGAGGTACATTCCACAGATAACAGGACAGGTACATCATCCTTAGAAAGGCTTGACCACCTCAAAAAATGTGTGGAGCGCTGCTACTTTAGTGATACGGACAAATCTTTGTGACATGGATTAATCCTGTGAACTCCTAGAATTTCACTGTTTCCTTCTTATCCATGCTGACTGCACCTGCTCAGCTTGATCTCTGCAGAGGGTGGTCCCATCCTCCCAAAGTAGAACTCCCCTAGCAGTGTCTCTCATGGGTCCAAATTTGAGACCTAGCTCAACTCTTTCTCATACAAAAGCTCTTTCACACAGTCACTCCGTTCAGTTAGAGCAGAGGAGATGGTAGTTTTAGGAAGGTTCTTAGATCACCAGCAATTGGCACACTGGACCACTTTGCAGATCTGCTCACAGGAGCAGCTTAGGCCGTCAACTACTTAGTATCATGCAGCAGTTCTCTGGTTTCTCTTCTCCCCAAAGCCTTCAGCTGCAATCAGTGTGTTTGCACCCAACACACCTTGCATTGCTGGAGCTGTCTGTCACGGGGAGGCTTGCGATGTTGTGTGTCTCATTGCATTTTCACTGGTCCAGACCAGTCCTTTCTTATGAGCAGCGCATAGTTTCCTTGTTTGGGATCCTACACTGTGGGACCCAAGGAATCCAGAAACAATCCAGTTGCTTGTGACTAAAGCACGAATTGATTTTGATAGCCACCCTCACAGAAGTGACCATTGTTTAGGGATATTACAGGTGAGAAGCAAGGAAACAGCCCTTGCTCCTTTGCAGTGAGTACAGAGCCCACAGGTGTCTGAAGTACTCCAGAAGTCACTTCATTAATGGTTTGTCACCATTCCTTCTCTTTTCTGGCCACCAAGCCAGTGGTATTTGCTGCATATGCCTTCTGGGTAGATCATTCTCAACTCCATTTATACTGCATACAAATACTTCAAGGGACAGTAGAGTCTCTAGTTAAATGTAAGGGGCTTTTTTGTACACCTTCCTCTTTATTTGCAGAGGTGATTATTATTTTTACTGGTTCTCTTCCCTTCTCCTTAG
Seq C2 exon
CAATATGCATTTTGCCATGTCTCAATGGAGGTCGCTGTGTGGCTCCTTACAAGTGTGACTGCCCCCCTGGATGGACTGGATCGCGGTGCCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015721:ENSGALT00000025350:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PU(9.4=9.1)
A:
NA
C2:
PF0000822=EGF=PD(87.5=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]