BtaINT0146284 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000292 | TCIRG1
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 [Source:HGNC Symbol;Acc:HGNC:11647]
Coordinates
chr29:46215714-46216092:+
Coord C1 exon
chr29:46215714-46215934
Coord A exon
chr29:46215935-46216020
Coord C2 exon
chr29:46216021-46216092
Length
86 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
CGGGGCCTCTTGGCTCCTAGTCG
3' ss Score
5.73
Exon sequences
Seq C1 exon
CCTTCCTGCAGGAGGAGGTGCGGCGGGCTGGGCTGATGCTGCCTCTGCCCGAGGCGGGGCTGCCGGCGCCCCCGCCCCGCGACCTTCTGCGCATCCAGGAGGAGACTGACCGCCTGGCTCAGGAGCTCCGGGACGTGCGGGGCAACCAGCAGGCCCTGCGGGCCCAGTGGCACCAGCTGCAGCTCCACTCTGCCGTGCTGGGCCAGGGCCACAGTCCCCCG
Seq A exon
GTGAGTGTAGCTCCCAGGGCAGGGGCACGGGGCGGGGGTGCGGGGCCCCCCCTGGGCTGGGGCTCACGGGGCCTCTTGGCTCCTAG
Seq C2 exon
TCGGTGGCCACTCACACCGATGGGCCCTCGGAAAGGACCCCCCTGCTCCAGGCCCCCGGAGGGCCGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000292:ENSBTAT00000000367:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.432 A=NA C2=0.833
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(42.7=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCTTCTGCGCATCCAG
R:
TCCTTTCCGAGGGCCCATC
Band lengths:
179-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]