HsaINT0165066 @ hg38
Intron Retention
Gene
ENSG00000110719 | TCIRG1
Description
T-cell immune regulator 1, ATPase H+ transporting V0 subunit a3 [Source:HGNC Symbol;Acc:HGNC:11647]
Coordinates
chr11:68042643-68043031:+
Coord C1 exon
chr11:68042643-68042863
Coord A exon
chr11:68042864-68042945
Coord C2 exon
chr11:68042946-68043031
Length
82 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
TGGTGCTTCTGGGTTCCTAGCTG
3' ss Score
4.83
Exon sequences
Seq C1 exon
CCTTCCTGCAGGAGGAGGTGCGGCGGGCTGGGCTGGTCCTGCCCCCGCCAAAGGGGAGGCTGCCGGCACCCCCACCCCGGGACCTGCTGCGCATCCAGGAGGAGACGGAGCGCCTGGCCCAGGAGCTGCGGGATGTGCGGGGCAACCAGCAGGCCCTGCGGGCCCAGCTGCACCAGCTGCAGCTCCACGCCGCCGTGCTACGCCAGGGCCATGAACCTCAG
Seq A exon
GTCAGCTCCCACCCAGGCAGGAGACTGGGGGGCTGGGGAGGGGCTGTCCAGCCTAGGGCTCATGGTGCTTCTGGGTTCCTAG
Seq C2 exon
CTGGCAGCCGCCCACACAGATGGGGCCTCAGAGAGGACGCCCCTGCTCCAGGCCCCCGGGGGGCCGCACCAGGACCTGAGGGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110719:ENST00000265686:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.376 A=NA C2=0.862
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(26.4=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCGCATCCAGGAG
R:
CTCTCTGAGGCCCCATCTGTG
Band lengths:
173-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains