RnoINT0148874 @ rn6
Intron Retention
Gene
ENSRNOG00000017220 | Tcirg1
Description
T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 [Source:RGD Symbol;Acc:735136]
Coordinates
chr1:219135788-219136187:-
Coord C1 exon
chr1:219135967-219136187
Coord A exon
chr1:219135877-219135966
Coord C2 exon
chr1:219135788-219135876
Length
90 bp
Sequences
Splice sites
5' ss Seq
CCGGTCAGC
5' ss Score
4.61
3' ss Seq
CAATGTCTCTTGGTGACCAGATG
3' ss Score
4.14
Exon sequences
Seq C1 exon
CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGCCTGACACTGACCCCACCCGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGACCGCTTGGCCCAGGAGCTTCGGGATGTTCGAGGCAACCAACAGGCACTTCGGGCCCAGCTGCACCAGCTACAGCTCCACTCAGCCGTGCTGGGCCAGAGCCACGCCCCTCCG
Seq A exon
GTCAGCCACAGTCAGGGCAGGGATGGGGACAGGAGATACATATGCCAAACCCAACCTAGGCCGGGCCTCACAATGTCTCTTGGTGACCAG
Seq C2 exon
ATGGCAGCTGTCCATACGGAGGGACCCACCACTGAGAGAACACCCCTGCTTTCAGCCACCCCAGGGCCACATGCAGACCTGAAGGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017220:ENSRNOT00000023425:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.446 A=NA C2=0.700
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(9.1=100)
A:
NA
C2:
PF0149614=V_ATPase_I=PU(6.0=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGTTCGAGGCAACCAACA
R:
CTTCAGGTCTGCATGTGGCC
Band lengths:
175-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]