BtaINT0146408 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007271 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr17:54255390-54256475:-
Coord C1 exon
chr17:54256395-54256475
Coord A exon
chr17:54255502-54256394
Coord C2 exon
chr17:54255390-54255501
Length
893 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATC
5' ss Score
3.45
3' ss Seq
ATAATCTTTTTATTTTATAGCCG
3' ss Score
8.75
Exon sequences
Seq C1 exon
GTTACCAACTTGGCAAGCCTGTTCGAGCTCTAAGCACCAACGGGACAAATAATGTCACAACTTTACACCTTTGGTATCCTG
Seq A exon
GTAATCTGATTTGATGATATGACTAGCTGTCTGGTGAACTAGTGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACAGAGAAGCCTGGTGGGCTGCAGTCCATGGGGTCGCTAAGAGTCGGACAGGACTGAGCGACCTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGCGGAGCCTGGTGGGCTGCGGTCTATGGGGTCGCACAGAGTCGGACACGACTGAAGCAACTTAGCAGCAGCAGCAGCTGGTGAACTATAATTGGAAATATTGCCATATTTTGAATCTGATCGAGTAACCAATTACTTTAAAGCCTGGTGTGTTTATTTAGCCTAGGGGTGGTTGTTTTCCATGCTTCTGCAGCTTCCTTTTCTTTTTTCTTTCTTTCTATAAAAAATGTTAACTGTTTTCGCTTGAAGTGCTGATTTTCAATAAGAGATTTAAATATGAAAGTGGCTGGAGACTCCATCGTCATTGTTGTCATTGATTAACCCAAGATGGTGCTAATCAGAGACAGGAAAATAGTTTCATTCCAAACTATGGAAAATCTTTGCATCAGTGGTAATTACCCACATGTGCCAGAAGGCATTAAATTTCAGGTTCAGAATAAACCCCTGATCCCTGTCCAGGTATTTTGATACAGAAAGAAACCTTTGTTCAGCTTTCAGAGGATTAGAGTAACAATGACCTCATTTCTAGAGAACTGGAAACTATTTCTGCTTGTTGTTCTCTGTTTTTTTTTTTTAAGAAAAACTTTGAGGTAAATCTTCTACTTACTTTTGTTTTGCAAAAATAGCAAGAGAATAATCTTTTTATTTTATAG
Seq C2 exon
CCGGAGGGAGCTTGTGTTCGACAGCAACTCGCAAACCCATTTTATTTGGAGAAAACGTACTATCTGGGTGCCTTTTAGAAGTTGGAATTAATGAAAACTGTACTAAGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007271:ENSBTAT00000009562:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=PD(2.2=21.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development