MmuINT0158429 @ mm10
Intron Retention
Gene
ENSMUSG00000029386 | Tctn2
Description
tectonic family member 2 [Source:MGI Symbol;Acc:MGI:1915228]
Coordinates
chr5:124619031-124620225:+
Coord C1 exon
chr5:124619031-124619108
Coord A exon
chr5:124619109-124620113
Coord C2 exon
chr5:124620114-124620225
Length
1005 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GGCTTATCCTTCTGTTGCAGCTG
3' ss Score
9.42
Exon sequences
Seq C1 exon
GTTACCAGCTTGGCAAGCCGGTCCGAGCCCTGCATACCGCTGGGATGAACGTCAGCACACTGCACCTCTGGCAGCCAG
Seq A exon
GTGAGGTGGTTGTGACTTGCTAAAAGTGTTCTGCCCCCATAGCCTGGAGTTAGAAACATTTTCTGGCTTATGGTGTGTGGGGAGGGGCGGCTTTTTGTGTTTCCAGGACGTTCCCCCCCCCCCCGTCCCCCCTTTTTCAAGGATGCCTTGCGTGTTGTACCTAAAGTGCTGGGTATTTGTAAGAGCTTTTCAGGCAGGGTTGTGCTGTCTGTGGCCATAGCCCATCATGCTATTCCTTGGAGCCAAAACAGCTCCCTCTGAACAGAGGGCACCCAGCATGGCAGTAGGAGTTGCCCACACCTGCCTGAAGCAGCAACATCCGGCTTACAGGAAGCCCCCAGCGCCTGGTCCAGGAATTCTCACATAGGATGGAGCCTTCATTTGGCTTTGAGAGGATCAGAAGGATTAGAGCAGCGATTCTCAACCTTCCTCCTAATGCTGTGGTCCTTTTATACAGTTCTTCATATTGTGACCCCAACCATGAAATACTTGCCTTGATACTTCATAAATGTAATTTTGCTACTGTTATTAAATTGTAGTGTAACTACCTAACTTGCAGGCTACCCCTAAAGGGTCACAATGCCCAGGTTGGGAACCACTGGATTAGAGTTTTCAGAAGCTAGAAACTTTATTTTTACTTTCTGTTGTCGGTTTTGTTTTGTTTAGCCGGGTGCGTTGGTGCATTCCTGTGGTCCCGGCACTTAAAAGGTGGAGGCAGGAGGATCAGGAAATCAGGCTACCCCCAGCTGCATCAACAATTCAGGCCAGTCTGGGCTATGTGAGACCTTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGATAAAAAAGATAAAGATTAACACTTTTTGTTCATTTGAAACAAGGGCTTTCTATTTGCCCAGGCCTTCAACCACCACACCCCTGCCTCAGCCTCCTGTGTGCTGAGAGAGTTTTCAGGAAGTCCTTGAAGTAAATCTTTACTTGTATTTAGCAGAACAGTGAGGGGCTTATCCTTCTGTTGCAG
Seq C2 exon
CTGGAAGGGGCCTGTGCACAGCAGCCGCTCTCAGACCCATTTTGTTTGGAGAAAATGCCTTCTCTGGCTGCCTGCTGGAAGTTGGGATTAAGGAGAACTGTACCCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029386:ENSMUST00000185820:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types