HsaINT0165220 @ hg38
Intron Retention
Gene
ENSG00000168778 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr12:123696415-123697198:+
Coord C1 exon
chr12:123696415-123696495
Coord A exon
chr12:123696496-123697086
Coord C2 exon
chr12:123697087-123697198
Length
591 bp
Sequences
Splice sites
5' ss Seq
CGGGTAATC
5' ss Score
4.59
3' ss Seq
ATAATCTTTTTCTTTTATAGCTG
3' ss Score
10.87
Exon sequences
Seq C1 exon
GTTACCAACTTGGCAAGCCTGTCCGAGCTCTAAATATCAACAGGATGAATAATGTCACGACTTTACATCTTTGGCAATCGG
Seq A exon
GTAATCCGGTTTGGTCATTATGATTAGCCCTTTGGCAAATTGGTGTTAGAAGTATTACCATATTTTGAATCTAATCAAGCAATCAATTATTTTAAAGCCTAGTTGGTTTATTTAGCAGAGAGGTACATGCTGCTGAATAACAGTGATGATGGTTTTTCCTGCTTCTACAGCTTTTTAAAAAGGAATGCTAACATTGTTTGCACCTGAAGTGCTGGTTGCTAGTAGAAAAGATTGAAATATGAGATTGGCTTGAGAGTCCCATGTTATTGTTGCCTGTAGCCCAGGATGGTGCTAATTGGAGACATGAAAATAACTTCGTTCTGAACTGCAGGAAATCTGTGCTTCAGTGGTAATTACGCACACCTGCCAGAGGCAGTGTCACTTCTGAAGAAACCACCGCTCAGGATCTGAGAAGTCTGATAAAGGCACCTTTGTTCAGCTTTGAAAGGATTAGACTAACAGTGATCTCAGTTTTTGAAAACTGGCAACTTTATTTCTACTTACTGTTTTCTGTTTTTCACGGAAAACTGAAGTTAATCTTTACTTTTGTTTAGCAAAAAGTAGCAAGAGGATAATCTTTTTCTTTTATAG
Seq C2 exon
CTGGAAGGGGTCTGTGTACATCAGCAACTTTCAAACCCATTTTATTTGGAGAAAATGTACTCTCTGGATGCCTGTTAGAAGTCGGGATTAATGAAAATTGTACTCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168778:ENST00000303372:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=PD(2.2=21.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACCAACTTGGCAAGCCTG
R:
AGCTGAGTACAATTTTCATTAATCCC
Band lengths:
190-781
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains