BtaINT0146419 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007271 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr17:54262835-54264133:-
Coord C1 exon
chr17:54264007-54264133
Coord A exon
chr17:54262977-54264006
Coord C2 exon
chr17:54262835-54262976
Length
1030 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
CATTCCCCCCTTGCCCTCAGGTG
3' ss Score
10.77
Exon sequences
Seq C1 exon
TTCCTCTGGACATCAAGTTTCCTTTGGCATATATTTGCATACTGATCTAAAAGACTTTTCAGATTTTGGTTACAAACAAGGAGACCCCGTTATGACAGTAGATAAGGCATATTTTACTATTCCACAG
Seq A exon
GTAATCCTTTCAGTTTTAATATGCCAGAAGCTTTTTCTCACTTTCCCCTTCCTCTTACTAATTTAAGTCATGTTATTCTAAAAAAAAAAATCTCTTCCTGAATTACGTATTTTTCTCCTATGGACTTTTCAGGCACTCAGCCATTTAAGGTCTCTGCATTGTTTTTTTCTTTTGATAGTCACTCTTAAATCAATCTGTCTTTGCTAAATCTCAGAGTGAACTTACTAAATAAAACCAAAAGACCGTCTAGAAGTTTCCATGGAAGTAACTATTGTTTCTCACTTGTATTAGTTTAACAGGCAATTTCTAGTAAGCCATAAATACTTTTAAAATTTTATTTATTTTTTATTGAAGTATATTTGACTTATGGTGTTGTGTTAATTAAATATTTAATAGAATTTTGAAAAATATTTTAAGACTTGAGTTTTATGTGAAATCTTACCTTTATTAAGTTCAAAATTATGAGGAAAAAGTATTTATGGGAAGATGACATGGGAGGCTAAACTGTTTCTCTTTACTATCCATATGAATCCGTTCTTATGGCTTTAACAAAAATGCATTTGTAATGAGGGAGAGAAAATGAAGTTGAGGGACCCTCCCTGGCAGTCCAGTGGTTAAGACTCTGTGATTCCACTGCAGGGGACACGGGTTCCCTCCCTGGCCGGGGGAACTAAGATCCTGTATGCTGCCTGGAATGGCCAAAAAGTGAAAAAACAAAAGACAACAACAGAAAAGAAACTGAAGCTGAATGTAATCATGTTTCTGCAAAGTAAATGATGCAAAGCAGGGAATTTTCTTTAGAAGCTGTACTTACTGTGACCCTGCAGCCAGTGGCTTCCGGAGTTTGATTAGCAAGTCAAGTAGATACTCTGCTCAAGTCAGTTAACTAGTGAATGCCCTAGCCTTTATTGGAGCTAACCCAGCAGTAGAAGCAGGCTGCAGAAAGGATGCTTTTCCAAGACACTGATCTCTTTTTTCTATGATCAGAAAGGAGGTCATAAATCTGTCGGCATTCCCCCCTTGCCCTCAG
Seq C2 exon
GTGTCCCTGGCTGGGCAGTGCCTCTACAACGCTCCTGTGGCTTTCCTGCAAAATTTTGATGTTCAGTGCGTTACTAGCCTGGAGGAGTACCTAGAACGAGATGGAATTACCAGTGCAAAGATAAAGAATGGTGCTATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007271:ENSBTAT00000009562:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(15.5=100)
A:
NA
C2:
PF077736=DUF1619=FE(17.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACATCAAGTTTCCTTTGGCA
R:
CTCCCATAGCACCATTCTTTATCT
Band lengths:
263-1293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development