MmuINT0158440 @ mm10
Intron Retention
Gene
ENSMUSG00000029386 | Tctn2
Description
tectonic family member 2 [Source:MGI Symbol;Acc:MGI:1915228]
Coordinates
chr5:124608519-124610411:+
Coord C1 exon
chr5:124608519-124608642
Coord A exon
chr5:124608643-124610269
Coord C2 exon
chr5:124610270-124610411
Length
1627 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TCAATGTCTCTTGCCCTCAGGTG
3' ss Score
11.44
Exon sequences
Seq C1 exon
TTCCCCCAGACATTCCCCCGGCTTTGAAGCCCATTTGCACTTCGACCTAAGAGACTTCGCGGATGCCAGTTACAAGCAAGGAGATCCCATTATGACCACGGAGGGGTATTTTACCATCCCCCAG
Seq A exon
GTAACACCTTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCCCTCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTGATCTCTTTCTTTTTTTTCTTTTTTTGGTTTCTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGCAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGTCTGCCTCTGCCTCCGGAGTGCTGGAATTAAAGGCGTATGCCACCACGCCCGGCTTTTAAAGATTTATTTATAATATGTAAGTACACTGAAGCTGTCTTCAGACACCCCAGAAGAGGGAGTCAGATCTTGTTACGGATGGTTGTGAGCCACCATGTGATTGCTGGAATTTGAACTCAGGACCTTTGGAAGAGCAGTCGGTGCTCTTAACTAATGAGCCATCTCTCCAGCCCAACACCTTCCATTTCAAAACTCAGATTTAACTAGCATTGCCCCTAAGGATCTCCCGCTAAGTGGCTTATTTGCCTCTTGTGCATTAATAGTGTCTAGACTGAAAAGACTCCTCAACCCATCTCTTTGCTAAGTGGACGTGGGAATGCGTGTAATGGAGCGGCAGAGTCTCTGTGTGGGCTCTAGAGGCTGTGGTCAGTCTCCAGTTCATTCCCTATCAGTGTTTTATGCTTTTGCTGTGCTGGGGCTGGTACCGAGAACCTTGTGTATCCCAATCAAGGCTTCTCCACTCCCAGCCCCAACCCTTTCTAAGAAGCTCTGAATATGTGGTGGAGTATAACACCTAAGAATGTTAAACAGGGGCTGGTGAGATGGCTCAGTGGTTAAGAGTGCCGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAATGAAATCTGACGCTCTCTTCTGGAGTATCTGAAGATAGCTACAGTGTACTTACATTAAATAAATAAATAAATCTTTAAAAAAAAAAAAAAAAAAGAATGTTAAAACATAGCTGGGCAGGGGACTCAGTTTGTAGACCAGGCTGGCCTTGAACTCACAGGGGTCTTCCTGCTGAGATTAAAGAGGTTCTAGCCCTGTGAACCAATTTTTATGTTATTGAAACTGCCTGGGGGTAGGAAGTGGTGCTTAGCAGTAGAGGCGATAGTTTTCCCATGTAGGGCCCTGGCTTTCCCATCTCCCTCCAAAATCAAGTTGTGATGAGAGTGGCACGGAGGTCAAATATGCCTCATGATTTGTATGGTTAGGGGACATGGCCAGGGTCTGTCCTGGGTGACCTAAGAACACTTAACTATTAGTAGTGGCTTCCAGATCTTAGCTCCCTAAAGTTGGTCACCGTGGGTACTTACTGTAGACATTATCCAGCAATAGGGCCAGACAGAAGAGAGCAACTTGGAGTAGGGTAGCCCCGAGGTAGGGTCTCACCCTGTAGTGCGTGCTGGTCCTGAGTTCAGAGCACTCTTGCCCAAAGCTCCTGAGTGCAGGGATTGCAGGCTGGAGCACCAAGCTTGGAGGAAAGACTTTCTAAGATGGGAGGAAGAAATCAATTGAAATCAATGTCTCTTGCCCTCAG
Seq C2 exon
GTGTCTCTAGCTGGGCAGTGTCTACAGGATGCTCCTGTGGCTTTCCTGAGGAATTTTGACAGTGTATGTACCATGGACCTGGAAGTGCACCAAGGACGAGATGAAATTGTCCTCGAGAACATGAAAATCCGCACAACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029386:ENSMUST00000185820:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCCCAGACATTCCCCC
R:
CTCCTGTTGTGCGGATTTTCA
Band lengths:
266-1893
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types