GgaINT0007647 @ galGal4
Intron Retention
Gene
ENSGALG00000023683 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr15:4929583-4930461:-
Coord C1 exon
chr15:4930338-4930461
Coord A exon
chr15:4929719-4930337
Coord C2 exon
chr15:4929583-4929718
Length
619 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TTCTGTTGAACTACCTGCAGCAG
3' ss Score
5.25
Exon sequences
Seq C1 exon
TTCTGCACCCAGAGTTCCTCCATTTAGGATCCCTGTACAAGCTTCTCCTGGGAAACTCTTCACTGGTTACAGACCAGGAGATCCAATTATGACAGAAGATGATGAGTATTTTACCATCCCTCAG
Seq A exon
GTAATTGCTCCATGTTTAGGAGCTTCTGATTTCTCTTGGCTAGTTTGAAATTCTCCATTTATCACATTCTTTAGTGTTTGTAACCAAATTCTGTAACTTGCTCATGTGAACTGGTGGACTATATTTTTCACCAAGCACAAAATCATTGTTAAAAACCATCATTATGTTTCCTAATCCCCTGCCCACCCCTCCAGATGGTAATGTTTTAATTATTTCAAGAGATAAAAACAAGATTTGCATCCCAATTAGTGGTTTGTGGCTTATGTATTTTTTATGTATTTATGTATGTGGCTTCTGTATTTTTTCCTCTCTGCCTGCTGCATTGCTGACCACTTGTTGCTTTCTCTTTGTTTTATCTGGCTGTATGCTTTTTTTTAAGTCCTTCTACATATTACAGACTGGATAGTTAAAATTGGTTTATCAAATTTTGATGACTCCAGACTGCACTTTAAAACTGATTGTTTTTGAAATAGTTACAACCTCCCTTTTATGCAGATTACTTGTTTGTCAATCACGTGTGGCTGCAGTGCATACTTGGGGGCATTTCACTGACAAACGTGCTTTTTCCTTGCTTTTCATTTTAAGGCTAACACACATGTTTCTGTTGAACTACCTGCAG
Seq C2 exon
CAGTCCCTGGCAGGGCATTGTGTTAGAAATGCCCCTGTAGCGTATCTGCAGGACTTGGATGTGAAGTGCCTTTCTGAGGCAGCATCTTACAAGGAAGGACTGCCCCATGATGTGAGAATCAACAGTGGAACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023683:ENSGALT00000005096:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(15.3=100)
A:
NA
C2:
PF077736=DUF1619=FE(16.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACCCAGAGTTCCTCCATT
R:
CCTGTTCCACTGTTGATTCTCACA
Band lengths:
255-874
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]