BtaINT0148526 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015713 | TLK2
Description
tousled-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr19:47655080-47659358:+
Coord C1 exon
chr19:47655080-47655161
Coord A exon
chr19:47655162-47659266
Coord C2 exon
chr19:47659267-47659358
Length
4105 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TTTATTCCTTTTCTTTATAGGCA
3' ss Score
10.45
Exon sequences
Seq C1 exon
ATTTAAAGATCATCCAACGCTAAATGACAGATATTTGTTGTTACATCTTTTGGGTAGAGGAGGTTTCAGTGAAGTTTACAAG
Seq A exon
GTAAGTATGAGGAACTGGGTATAGAGACTGAGAGTTAAGTTATTGGTTATTACAAACTTAGAAAACATTTAAAATAGCGATAGAATTGTGACTGATATCTACTGGCCAAAGTTCCAAACTGTTAAGAACCTGTGTATCAAAATGATCCCTTGGAGAAGGAGACGGCAACCCACTCCAGTATTCTTGCTTGGGAGATCCCATGGACAGGTGGGCTATGGTCCATGCGCTCGCAAAAGAGTCAGACACAACTTAGAGTCTAAACAACAACTATCTTTGGGAGAACTGCTTCTAGTAAACTTGTGACTAAGCAGGAGTCAATATTTTACCCTGTTTATCAAGTTTGAAGAGTAATTACAGATTAAAAAAAAACAACAAACAGAAAATAGCACCATTTCTGGGTAATGGAATAGTGGTGATTTTTACTCTGGTTTTGTACTTTCTGCCTCATCTGTATTTGTTAGAGATGAATGCTACTTTTATTCTAATAAAATTTATATATATATATATATATATATATATAATGCTTAAAATAGATGTACTAAAAAATTAATTCTTTGAAAACCTGGTTTTTGCTTTTAAAGTGTTGGCATCTTCCATGTCAGAGTGTTTAGTAACACTGGTTTTGCTGAAGGATTGTCCTGGCTTAGAGTGCTTCAGTTGGCACAGCAAAGTCCAGGCTACTGTGGCCTCCAGTTGATTTTCCGTGAATGAGAAATTCTGCCTGTTTTAAATACACCAACCACAACCTCCTTAAATTTCTCTGTTTCTGGCACCTGGCATTTAAATGCCCAATTAGTTTATTAATTTGTCTTTACTGTATGACCCTAGTAATTCCCTCTTTTCTAAGTTGTAGCCTATACTGTTAATGATTTATGTTATGCCCATATGAATTTTTATATAGAAAATCTTTTGAGTGAAATACTTATTTCAGATAAAAACATTAGTTTTTCTTTTTTCTCTTTTTTAATGTGAATTTTTTTATTGTGGTGATGTATACATGATACCTACCATTTTAACCATTTTTAAGTATACAGTGGCATTACATGTACAGTGTTGTGAAAGTATCATCACTTCCCATTTCCAGAATTATGATAATATTTCTAGTGTACTGCTGGGTTTCATTTTCTAGTATTTTGCTCATATTTTTAATCTATGATCATAAGTGGTATTGGCTTACAGTGTTTTTTTATGTGCAGGCAGCATTGTCTAGCTTTGATGTCATAGTTATTCCAGGAGTTGTGAAACTTCTTTTTTCCCATGTTCTGGAGTGTTTTGCATTACATGTTGGCTACGTGGAAGTTGTTAGTGCTAAATCATAAAATCAGCTGGGTAGTTGTCATTTTAGAGGAAAATAGTCTTTTCAGTTTCTTTTACAAATATTGACCCATTCAGACTTTCTTCCCTTTCTTAAGTTAGTTTTGATAATTCATTTTTCCTGGAAAATCATCCTATTTCATCGTGATTTCCATACTTTATAAGTTATTTCTCTTATGAAATGTTTATTTTTGTATCTTTTGACTAATAGGCCAGAGGTTAGTTAGTGTTTCTTTTTTCCTCTGGAGATTAACTTTTTATTTTTGTTGATCAGATGTACTATTTGATTTGTTCTGTTTTCATTGACTTTTGCTTTCAAATCTTCCTTCTGTTTAGTTTTCATTTTGGGTCATATACTTAGTTTATTATTTATTTGGGGTAATTTTAAAAATTGTGGTAAAAAACAAATAGCATAAAATGACTAACTTAACCTTTTTTAAGTGTTCAGTTGTTGCTGTTCAGTCGTGCAGTCATGTCCAGCTCTTTGTGACCCCATGGATTGCAGCATGCCAGGCTTCGTTTTCCTTCACTATCTCTGGGAATTTGTTCAAACTCATGTCCATTGAGTTGGTGATGCCATCCAACCATCTCATCATTCGTTGTCCTCTTCTCCTGCCTTCAGTCTTTTCCAGCATCAGGGCCTTTTCCAATGAGTCAGCTCTTTGCATCAGGTGGCCAAAGTATTAGAGCTTCAGCATCAGTCCTTCCAGTGAATATTCAGGGTTGATTTCCTTTAGGATTGACTAGTTTGGATTCCTTGCTGTCCATGGGGCTCTCAAGAGTCTTCTCAGTTCAGTAGTGTTACATATATTCATGTTGTTCTGAAACAGATCTTCAGAACTTTTTCATCTTGCAGAACAGGAGCTCTACTCACTAATCAGCAGCTGTCCTTTTCCTTCTTTCTCCAGCTGCCGGTAACCACAATTCTACTTTATATTTTTATTACTTTGATTATTTTTTGGTAGCTCATGTGAGGAATCACAGTGTTTGTCTTTTTGTGACTGGCTTATTTCATTTACCATAATGTTCTCAAAGTTTATCCATGTTGGAGCATGTGACAAGATTTTCTTCTTTTTAAACTTGGATAACCCTGAGATTGTTTATATATACTTCATTTCTTTATCCATTCATCATCTGTCAGGTGACATTTGTGTTGCTTTCTTCTCTTATCTGTTGTGAAGAGTGCTGCTTTGAGTACGCATGTGCAAATACCTCTTTGCGATCTTGCTTTCAGTTCTTCTGGCTGTATACCCAGAAGTGGGACTATTTCTTTTTTAAAATCATCAAAATTGGTTTTTGGTGCTTCACTTGTTAGTGATTTCTTCATATTTTTTCCTGTTCTTCAAACATTTTAACACTTCTGAAGTCTAAATGCTTCTTACAACAATATGTACATCAATGTATTCTTTTGCTGTCTTCCATGTAGCCCTTCTTCGATCATTGGTGAATCACAGTGTCTTGAACTCAGAAATAGGTTTTGATAATAGGAAAAAATGACACTTGTAGTTCATTGGTGCTCTTACAAATTAGGTGATGTTTAATCTGGCTTTTAATGGCTTGAAATGGTTCCCTCCTATAAAACCATGATGGATACATGCATACAGGTGGACTTTAGACTCTGTAAGAAAAATAGAGTTCAAAAGTTTCCATTTCTGTGAAATAAGATACTCTGTTTGAATTGAATGGTTTTTGTATTTTAAAAATACTGGTTTAAATTTGGTATGTGTTAGAAGTTTCTTTTATAAGCAGGCCTCTCTTGTATCCTGTGCTTTCCTAGAGGTAGCTTGTCTTTTAAAAGATCTGTAGAGTAATCACCACTCTTCATGGACTATATATCCTCTGCCTGTTGTCTTCATCTATTCATATGTTTGTGGAAACTGGTAGATAGGTGGTAATAGCATTGGAACTGAAGCAGTAAGTTTTTAATTTGGACATTAAAGCCAAGTTCATTCTAAAAAAGTTCCTCAAAAAATTGTATTGGGGAAATCTGTTGTAAAATGCTACTTACTTTTTCAAATTGTGATGTACGCCAGGCGTCCTTGAAAATCTGTTATCTTTTTTTAACCCCATAATCTAGCACCGCTGAGCTGATCTGGAGCTTGTGCCAACAGTGGTGGCCTTTGGGGAAAGCATGTCCCTTTTTTTGGACGGTGCTGCATAAGCGACTAGCTTCTGACATTGTTGAGGTCCAAAATTACTTTTTATTTATCCAGTATGTAGGGGTGCAATTAAACAAACTTAGCAAAGAGGTGTGTCCTGTTTCTTAAGAAAGCAGATAGTCTATGACCCTAGCATTTCAAAAGTGGCAGGACCTCTGAACCTACAACTGCTCTAAAAATAAAGCCTATTAAAAAATATTTACAAAAAGGAAAAAAAAAAAAAAAAAACGTGGCAGGAATTACTGTTGAAGAATGTCAAGTCCCAGAACCAGCTAAGGGACAAGAGCCAAGAGGTGAGAAAGGTCCCAAATAGGGTAGATGATATCCAGAAAGAGAGTTGTTTAGAAGTGACTGTTAAGGCATGGACTGTCTTTCTGTTTATTGTATATGCTAGGTTTTATTTTCTAAACCCCTTGGTGCCAGTGTGTCTGGAGACTTCTCGATTGTCTCATCACAAGTTTCAAGAAAGATGATTACAACTCTGAAGGAAGTGTGCTCTCCACTGCCCTTGTTATTTAATAATGCATTTTGGACTTTTGAAAATGTTGGTCTGTTAAACAGAAGCTTCTGGTCAGTAGCCTGTAATTTTTGTTAGCATTATCCACAGTATAATTTATTCCTTTTCTTTATAG
Seq C2 exon
GCATTTGATCTAACAGAACAAAGATACGTAGCTGTGAAAATTCACCAGTTAAATAAAAACTGGAGAGATGAGAAAAAGGAGAATTACCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015713:ENSBTAT00000020882:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(22.5=57.1)
A:
NA
C2:
PF0006920=Pkinase=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development