GgaINT0143527 @ galGal3
Intron Retention
Gene
ENSGALG00000000410 | TLK2
Description
NA
Coordinates
chr27:2297132-2298941:+
Coord C1 exon
chr27:2297132-2297213
Coord A exon
chr27:2297214-2298849
Coord C2 exon
chr27:2298850-2298941
Length
1636 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CTCAGCTCTTCTCTCTGCAGGCA
3' ss Score
10.94
Exon sequences
Seq C1 exon
GTTTAAAGACCATCCAACGCTAAACGATAGATATTTGTTGCTACATCTTCTGGGTCGGGGAGGCTTCAGTGAGGTATATAAG
Seq A exon
GTAAATTCGAGGTGTCAATCTGATGTGATGTGAATTTGCAATGAAATCCCACAGTAAGCAGAACCTTGCAGTCATTTTCACAATGGAGTGTGTGGTTGTGGAAGGAAGAAGAACAGAACACATGTTACATCTGGCTTGTATTAGACAGCAGGCTTGAAATTTTTAGGTTCTGCTCATGTCCTCAGAGGTCAAATTTCCTGCAAATGTATGTTTCAAGAAAACATTGCACTAAATCTGCAGGTTTCACCATGACAGAAGCATACCATTCAAGTGCTGTACACAAATACCTTAAGTTGGCTGAGTTTTACTGTATGGCATAGCAAGTCTGAACTTTGCTGTAAATAAAAGAGAAAATAAATAAGAGCAAAGCCTTCACTTCCTGGGGGTAAAAGGCTTTTTTCTTCGCTTTATGCTCTGAAGTAGCAGACTGGGTGTGTGTATGTAGTCCTTGGAACTGAGGAGTGCTTGTCTGTCAGCACTCTTTGCATGGCCAAGACTTACGGTACTTAGGAGGTTCTTGTTATTTGATTATTGCACTTAAATCCTCTCCAGTGCTAAATATTCTCCACTTATACGCAGTAGTCTTTAATTCATGTTGAATTTGGGTAGAATTAACATAACTATGCCAATGCAAATGTTGGAAACATCATGATGACTTATTTTGATGCGATATAACAACAGGTACCTAAACCAGAGGGGCGTACTGCTCAGGTAGCCAAGAGGGAATGCTGCCTGCAAGTATTCCCCGTTTCTCTTTGGAGTCTCTGATGACTCAGTAGAAATCCAGAGCTCCACAGGTGAAAGGTGAAAGCAAGGGGATAGGAATGCTTCATACCTGACTGTGAATAAGAGTTATAATTACATTACTAAAACAAAGAAATGCTTATTTCTCTTCTCCACGGTCCATGCTGATCTGTTAAGCATTAGGAGTTAAGTATACAGCTTTTCAGCTGGATATGGATTAGCCTTGTTTGCTTACAATAGGATTTTACCCAATCCTGCAAATTATTAGATGTTTCTGCTCTCAGACAAAGTAACAGACTGTTTCATTTCTCCAAGAACACAATTCCAGTGATCTATTCTTTAAAGGCTGCCTAAATAGCAAGATACTGGACACACAGCACCAGAATTACACAGTTCAGCCCTCGAATTCTCTGGCTTCTAAACAAGCTGAGACATTTTGCTTCAAGATGGAGAGCTGAGCTACCAGCATGAAACAAAGTATTAAAGATCTGCTGTGTGATTTTCGTTTTGTTTTTAACTTGGTGTAGAAAAATAAGTTAGCTGGTTGGGGGAATAATGACAGCCTTTCCCAGAGTGATTAAGTGACTGCATTTCTGTAATTTGGCCGTTCTGATCCCATTGTAGCACTGGTAGTAAAATGTCAGAATAAATGCAGCATTAGTTGAATCCCATAGGGAAGGGTCAGATCAAAGCACAGAATATTCAATTGTTTTCAGAGTTGCTTGGTTTCATTAGTGAAACTAATTACATCAAAATGTGGATTTGCTCTTCGCTCAGTGTGTTGTAATGCTGATTTCCTGGGTGGGGAGATTGATTTGTTAGATCTTGTCTGCTTCTGCAGCATTAAGTTGAAGCTGTGATTCCTACTGATGCTCAGCTCTTCTCTCTGCAG
Seq C2 exon
GCATTTGATTTAACGGAACAGAGATACGTAGCTGTGAAAATACACCAGTTAAATAAAAACTGGAGAGATGAGAAGAAAGAAAACTATCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000410:ENSGALT00000000559:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(5.7=57.1)
A:
NA
C2:
PF0006920=Pkinase=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]