BtaINT0150365 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001925 | TMPRSS11D
Description
transmembrane protease, serine 11D [Source:HGNC Symbol;Acc:HGNC:24059]
Coordinates
chr6:85262400-85265880:-
Coord C1 exon
chr6:85265839-85265880
Coord A exon
chr6:85262578-85265838
Coord C2 exon
chr6:85262400-85262577
Length
3261 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TTACTTCCCTTTCCCATTAGAAT
3' ss Score
9.13
Exon sequences
Seq C1 exon
TAGCAATAACTGGCCAGGATACAATACAACTGTTCACTCGAG
Seq A exon
GTAAGATTTTAAATTACTTTGTAAATGTGGTTTACCAAAATAACAAGGGTAAATGTTCAAGTGATTTGTACTCTTTGCCAAGGAAGTATCTATTGAGATGGCATCAGTATTCTTAGTTTACTCATGTAGGTTGTTGTTGAAATTAGACACTGCTGACCTCATTGGGCTATGAAGTGATATTTAGGTTTTCTCCTATTTTTAGAAGGAGGAAGAAGTATTAGTGCCATTCCACCCACTCTGTATCAAGTTTGGTCTCATTAAAGTTTTCTTGGCAGCTTTGGAAAGTTTCTCCAGCCCTGATTCTATGGTTGCATTTTAGCAGACTTGCAAATTACGTTTGGCTGCACCATTTATATAGCTTTTCCTAACTACCAGAATAGTTTGCTTTGTGATAGATTTAAGTTAATCATAGAGTATAATAAAAAAATTACAAAAAGCATTATGAGTTTTATGTCTATAACATAACAGAAAAGTCAGGGTTTTCCAATGTCATTATATATACTCTCAGGCTAGGATAGCGGACATATAAACCCCTAGAAAAGAGTAGTTTGCTCCTTGGGCTGATAACATATAGTTAGAAATTAGTTTAATATATCTTGATAGCTGGCCTATCTCAGATACTTAAGCGATATTATAAATTAATACTTCCTCTATGGGTGTTTTTCAACTTCACGTATATTTATTTTAATAATTAATGCTTCTTTTTTATTAGAATGTGCTTAAATAATTTACTAGGGGCTTCCCTCGTGGCTCGAATGGTAAAGAATCCACTTGCAACTGGGAGACCCAGGTTCGATCTCTGGGTTGAGAAGATCTCCTGGAGAAGGGGATGGCAACCCACTCCGGTATTCTTGCCTGCAGAATCCCATGGACAAAATAATTTACTAGAGAACTTCCTTGGAGTATGCAGCAAAGGAACCTATATGCCATTTATATTCTTAATAGAAGTCTACTCCTCCTCTATCTGGGAGATCTGTTGGAAAATAAATGCCTTTGGATGGCATCCTATTGAAGTCATATCACTCACCTTAGAGCTGGTTCAGCAACAGAAACTTTTCATGGTGATTTACCTCTAATTTCTTAGTAACATACTAACCAAGAGGAAATAAACCATGAAAGTAGGAGTTGAGTGATCAAGCCCGCATTTCAGCTTTGGCCACTGGAGTGTCATGGGCTTTCTTAAGATGTTTAAATAAACCTAATCTAGATACTTAAAAACCCTCAATCACCCTCGAGAATATTCTGTGGACCTAAAGTAATTCCTTTTCTGGGGCCCATTTGGTAAGATAGAGTCAGTTATGGATGTGGACTGGGTCGTCCGTGATGAACTGCATTACCACCACAGCCTTCATGATAAGAGTAGTTTCCCTCTAATGTCACTATGCACATGAATCACTTGTTAAATACAGCTGCTAAGAAGTTCTGGGAACCTAATGTATGGCTTGGTGACTCTAGTTAGTAATATGGTATTATACATTTGAAAGCTGCTGAGAGTAGGTCATAAGTATTCCTACCAAACATACACACAAAAATGAGTTAACTGTGTTAGGTATTGTGGGCTTCCCAAGTGACTCAGTGGTAAAGACTCCACCTGCCAGTGCAAAGATGCAGGAGACCGGGGTTCAATCCCTGGGTCAGGAAGTTCCCCTGGAGGAGGAATGACAACCTACACCAGTATTCTTGCTTGGAGAATCCCATGGGCAGAGGAGTCTGGCGGGCTACAGTCCATAGGGTCTCAGAGTTGGACACAACTAAGTGACATGCCCATGCATGCATGTGTGAGGTGTTGCTGCTGCTAAGTCGCTTCAGCCGTGTCCAACTCTGTTCGACATCATAGACGGCAGCCCATCGGGCTCCCCCATCCCTGGGACTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCGTCTTCGATGCATGAAAGTGAAAAGTGAAAGTGAATTTGCTCAGTCGTGTCCAACTCTTAGCGACCCCATGGACTGCAGCCTACCAGGCTCCTCCATCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGATGCCATTGCCTTCTCCGTGAGGTGTTAGATGTGTTAATTATATTGAACTTGGTAATCATTCTGCAGTGTATTTGTATGTAATATCATCACATTGTACACTTAAAATATACACAATTTTATTTGTCAATTCTTTAGTAAAGTTCAAGGAAAAATGCAATTTTTGATTTGTTCCCTAAGGTGAGTCTGAGAGTCAACATTTCTTTTTGTTGTTGTTCATCTTTATTGTGGTATTATAATATATTTAAAGTGTACAATGTCATGATTTGATATATATATATATATATTATGAAAAGGGTTCCCTCATCTAGCTAATTAACACATTCATCACCTCATGTATTTATTACCTCCCTCCCTTTTTTTTGGCAAGAACATTTAAGTTCTACTCTCTAGTAAATTTCAATTATATGATACAGTGCTGTCAGACATAGTCATAATGTTATACATTTGATTCTCAGACCTTATTCAGCTTATATCTGAAAGTTTATATCCTTTAACCAAACTCTTCCTATTTCCCCTACACCCTGGCAACCACTTTCTACTGTTTCTGGGTGTTTGGCTTTTTTTTAAATTTCCACACAGAAGTGATACCATGCAGTATTTGCCTTTGTCTGGCTTATTTCCTTAGGACAATACCCTACAGTTTCATCCATGTTGTTGCAAGAGACCGGATTTCCTTCCTTTTTAAGGCTGAAAAACATTTCAATGTGTGTGCATGTTTCTATGTGCATATATACCACACTGTTTCTTAATCCACGCATCTACTGATAATCACTTAGATTGTTTCCACTCAGAGCCAACATTTCTATCAAGCTCTTTGGGGACACTTATGTTGCAGGTCCACAGAACACACTTTGAATAGCAAGGCTATTGAGAAGATGGATATTCCCCAGGGAATCTGTAGCCTCAGCTAGTTCCTCTAGCACTGACCTACCTTAACCCCCACTCATGACAAATTCCAAAGAACTCTGAATCTGCTCCACAATTTGAAGCCTCCATGACAATCAAGTTCAGAAATGTTTTCTAAAATGAAATCTATAGGTAACAGTCAGATAAGTATTCTAAAAGTATAACATATTGATCATGCTTTTGGAAAGCCTAGCATGTCCTAAGAAAGAATACATAAAAGACATAAAAGTCATAAATTATGGTGAAATTCTTACAGCATCTCCCAGATGTAAGCATCATGATCTTCCTTGCACATTACTTCCCTTTCCCATTAG
Seq C2 exon
AATGTGGGGTCCGCTCAGACCTGATAACCTTGTCTGAGGAGAGAATCATAGGAGGCAGTAAAGCTGAGAAAGGAGACTGGCCATGGCAAGTCAGTCTACAGTGGAGCAGTTCTCACCGCTGCGGAGGAGCCTTGATCAGTAATAGGTGGATCCTGTCAGCAGCTCACTGCTTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001925:ENSBTAT00000002505:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.5=73.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]