HsaINT1044736 @ hg38
Intron Retention
Gene
ENSG00000178297 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr19:2413700-2415841:+
Coord C1 exon
chr19:2413700-2414018
Coord A exon
chr19:2414019-2415669
Coord C2 exon
chr19:2415670-2415841
Length
1651 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
GTCTTGTGTCCTCCTTCCAGAAT
3' ss Score
10.8
Exon sequences
Seq C1 exon
GGTGACTCAGGAGGACCCCTGGTCTGCGAGGAGCCCTCTGGCCGGTTCTTTCTGGCTGGCATCGTGAGCTGGGGAATCGGGTGTGCGGAAGCCCGGCGTCCAGGGGTCTATGCCCGAGTCACCAGGCTACGTGACTGGATCCTGGAGGCCACCACCAAAGCCAGCATGCCTCTGGCCCCCACCATGGCTCCTGCCCCTGCCGCCCCCAGCACAGCCTGGCCCACCAGTCCTGAGAGCCCTGTGGTCAGCACCCCCACCAAATCGATGCAGGCCCTCAGTACCGTGCCTCTTGACTGGGTCACCGTTCCTAAGCTACAAG
Seq A exon
GTATTTTCGGGGCAGAAAGGTAGAAGATGATGTACGTGCCTATCTTGATTTAGGGAGAACGGATATCGTCATAGTATCTTCATAATTTTGGATCTTCCTGTTCAAGGAAAGGTCACATGTGTATCCGTTTATTCCCATCTTACGTTGCGTGTACCCTCATGGTATCTTTCTGTCCACAGGTCTTGCCCATGTCTTGTTAACTATGGCGATCTATCAATGGGATACTTTTTTTTTTTTTTGAGACGCAGTCTTGCTCCGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAACAGCCGGGATTACAGGCACAGGCCACCACACCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCCCCATGTTGGTCAGGCTGGCCTCGAACTCCTGACTTCATCATCTGCCCACCTCAGCCTCCCAAAATGCTGGGATGACAGGTGTGAGCCACCATGCCCGGTCTGGAATACTTTCTATTGTATTTTCAAATAGTTTGTACCCAGACAACTTGTAGGACTGGCAGGGTGCGGTGGCTCGTGCCTGTCATCGCACACTTTGGGAGGCAGAGGTGGGCAGATCGCTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGCAAAACCCCATCTATACTAAAAATTAGCTGGGCATGGTGGAGGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAAGCGGAGGTTGCAGTGAGCTGATACGGTGACATGGTGCCACTGCACTCCAGCCCGGGCAACAAGAGCACAACTCCATCTCGAAAAAGAAAAAAGAAAACTTGTAGGACTATATCTCTGTTTCCAAAAACTGTTAGTTGCATTCCTATTTTTTTTTTTTTTTTTTTCTGAGACGGAGTTTCACTCTTGTCGCCCAGGCTGGAGTGCAGTGGTGTGATCTCGGCTCACTGCAACCTCCACCTCCCGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAATAGCTGGGATTACAGGTGCCCATCACCATGCTTGGCTAATTTTTGTATTTTTAGTAGAGTTGGGGTTTCGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATAACAGGCATGAGCCACCGCGCCCGGCCATGCTTCATTTCAGTTCACCTACACCCCACACTCTGTTCCGAAACCCCCTAACAATCGTACCCTTCCTTTTCTCAGCCGCCCCATGGGTCTCCTGGAGTGCAGCCCCGTCTTTGCAAGGAGGCCATAAACCTGGCTTTGTGGGCTGCGGGTCTGTGGTGGGGTCTGTTGCGGGGGGTCCTCGGGCTGACTGGGCCGCTGTATGTTTCTTTCTTAACTTCTGTCCCCGAAGCGAGGCCACGAACTTGCTGCAGGACCTTGGGCAAACTACGGACACCTTGAAGCCTCCACGGCTTCTTGTGTGGAACGGGAGGGATTGCGGCATCTTCAGGGCCTGGCTGCAACCGGTGTCCTGGGACCACCCCACCGGATGCTCCCACCCGAGCAGGCCAAGATCCCCAGACCTGGTCTTGTGTCCTCCTTCCAG
Seq C2 exon
AATGTGGGGCCAGGCCTGCAATGGAGAAGCCCACCCGGGTCGTGGGCGGGTTCGGAGCTGCCTCCGGGGAGGTGCCCTGGCAGGTCAGCCTGAAGGAAGGGTCCCGGCACTTCTGCGGAGCAACTGTGGTGGGGGACCGCTGGCTGCTGTCTGCCGCCCACTGCTTCAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178297:ENST00000332578:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.271 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.1=43.0)
A:
NA
C2:
PF0008921=Trypsin=PU(19.3=75.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTATGCCCGAGTCACCAGG
R:
CACAGTTGCTCCGCAGAAGTG
Band lengths:
342-1993
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains