BtaINT0150495 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000718 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr7:22466489-22467932:-
Coord C1 exon
chr7:22467614-22467932
Coord A exon
chr7:22466661-22467613
Coord C2 exon
chr7:22466489-22466660
Length
953 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
CTCCTGTCTTGTCCCTGCAGAGT
3' ss Score
12.13
Exon sequences
Seq C1 exon
GGTGACTCGGGGGGCCCCCTGGTCTGCGAGGAGTCCTCCGGCAGGTTCTTCCTGGCTGGCATCGTGAGCTGGGGAATCGGCTGTGCGGAAGCCCAGCATCCAGGGGTCTACGCCCGAGTGACCAGTCTGCGGGACTGGATCCTGGAGACCATCGCTTCTGCAAGCAAGCCTCCAGCCCCCACAGTGGCTCTCGCCTCCACCACTCTCAGCACTGCCTGGCCCACCAGCCCCAAGAGCCTGGTGACTGACACCCTCACCAAACCCACACTGGCCCCTAGCACTATGCCTCTAGACTTGGCCACTGCTTCTAAGCCACAAG
Seq A exon
GTATTTTCTGGGGAGACAGCAGCAGTGTGTGTCTGCTCTGCACAGGGTCGGATGGATTTGGTACTGGCTTTCTGAAGCACTCTGGGGAAGAGATGGGTGATTGATTAGTGATGTCTGTCAAGTGCATGGGCAAAGGCATGTGGTCAGCCTTCACATTTACTGCCCGATTCACTGGTAGCTCAGCAGTAAAGAATCCACCTGCAATGCAAGAGACCTGGGTTCAATCCCTGGGTTGGGAAAATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGTGGGCTACAGTCCATGGGGTTGCAGAGTCAGATGTCACTGAGCATCAGCAAAACTCAGGCCATCCAGGAGGGTGTACTCAGAATATCCTGAAGGTTCAGCAGGGGGCCAGTGACCAATGTGGGGGTGGGCAGGGTCAGAGAGAAGCTGAGTTGAGGCTATCACAGACATGGCACCCACAGGCAGCATATGCACTCTCCACCTGTCTTGACCATGTGGTTTCCGAGGACCCACGTCCAGGATCCCATTGCCCCATCTGATGCTGACCCCTCTTTATGGTCCCACAGACCTGCGAGGCTGAGAACCAATCCAAACTCTGCCTCATTTAAATACCGCCTGCACCTGCCCTGCCCCCAGCTCCATATAACCAGCTCTGTCCATTGAGCCGCCTGGGTTGTGCTGTAGGGGCTGCAGATGTGTGTCTGCTACGCTGAGGCTGGTAGGACTGGGGCCTTTACGAACTTGCCTTCTCTTCTCACCCACATCCCCCGCTGGACGAGCACTTAGGGCTCCTTAAGTCTCGGTTTCCTCATCTGTGTGATGTGCCACTTCCCAGCCAGAGACCCGGGGTCCCCCTGGAACCAGGGTGGTCCTGACGCCAGCAGGCTGAGGTGCCTGGACCCTCCTGTCTTGTCCCTGCAG
Seq C2 exon
AGTGTGGGGCCAGGCCAGCGCTGGAGAAGCCCACTCGGATCGTGGGGGGGCTTGGGGCCTCCTTGGGGGAGGTGCCTTGGCAGGTCAGCCTGAAGGAGGGCTCGCGGCACTTCTGCGGAGCCACCGTGGTGGGGGACCGCTGGCTGCTGTCTGCCGCCCACTGCTTCAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000718:ENSBTAT00000000958:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.084 A=NA C2=0.069
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.1=43.0)
A:
NA
C2:
PF0008921=Trypsin=PU(19.3=75.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCTGCGAGGAGTCCTC
R:
GATCCGAGTGGGCTTCTCCAG
Band lengths:
342-1295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]