DreINT0165412 @ danRer10
Intron Retention
Gene
ENSDARG00000029841 | tmprss9
Description
transmembrane protease, serine 9 [Source:ZFIN;Acc:ZDB-GENE-050208-573]
Coordinates
chr22:10735314-10737647:+
Coord C1 exon
chr22:10735314-10735701
Coord A exon
chr22:10735702-10737478
Coord C2 exon
chr22:10737479-10737647
Length
1777 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAAT
5' ss Score
5.18
3' ss Seq
GTCACCTGTTTTCTTTGCAGACT
3' ss Score
11.06
Exon sequences
Seq C1 exon
GGAGACTCTGGAGGCCCTCTGGCATGTGAGGTGGCCGCTGGGCGCTATTTCCTAGCAGGAATAGTGAGCTGGGGAGTGGGATGTGCACAGATCAATAAGCCTGGGGTCTATTCCCGTGTCACCAAGCTCCGCAACTGGATTGTGAGCTACACCAAAACTGCACCAGCATTCCAGGAGAACCCCACTGTCCCTAGTGTCACGACCACCGAGGCTCACCATGTGAAAGCTGCAAATCCTTCCTCTGAGCTCACCACTAGTGACTACATCCCTGCTCTTGGGAACTGCAGTGTCAATTATAACTGTGGCAGAGGCATGTGCATCAGCAAGATAAACCCAGAGTGTGACAGAGTCATCGACTGCCCCAATGAAGCCGATGAGAAAAACTGTG
Seq A exon
GTAAATAATCCCTATTCAGTAATCTACCATGAGGGTGCCCAATGCTCCTCCTGGAGATCTTTCTGGAAAGTTTTGCTCCAGCCCTAATCAAATACACTGAAGTACTTAAAGCCGGGGTGTCTAAAATCAGAGTCGGTGTCCTGCAGAGTTTAGCTCCAACTTGCTTTAACACACCTTCCGGGATGTTTCTAGCAAGCTCAGTAAGAGCTTGATTACCTGGCTCAGGTGTTTCTGACTTGGGTAAGAGGTAAACTATGCAGGATAAAGATAGGGTACCCCTGACCTAAAGGGATTAGTTCACACCAAAAATTAATCCGTTATTAATTGCTCACCCTCACATTGTTCAAAACCCATTTGTTCACCTTGGGAACACAAATAAAGGTATTTTAGAAGAAATCTGAGAGGTCTGTCAACAGATTTCATTTAAAATATTTTAATTTTTGTGTTCTCAAGATGAACAAAGTATTTGGGAGGATTGGATTAACTTGAGAATGTGTAATTGATAACAGAATTTTAATTAGAGTTAAACCTTTAATACAATGTTTCGGATGTCCTGGACGCCTGCCTAGGGAGGTATTCCAGACATGTCCCACTGGGAGGAGGACTCAGGGAAGGCCCAGGACATGCTGAAGGGACTACGGGCGTACTCACACTATGCTATCCGAAGCGTGCCCAGACCCATTTCTCGGTTTGTTTGAGAAGTGTGAGTGCTCTGAATCGGGCTCAGGCACGGTTCCCTTGGCTGACCCTGGCCCAGTTGGAAGAGATGTGCCAAAGCACGGTTCACTTGGGCTCAGGTGCGGTATGCTTGTGTGTGAGTGCAAAGCGCGTCAGAGCCCAAAACAGAAAGCGAGATGTGAGTTTTAAGGGACTGTTTGATATGAGTTAATTAATCATTCGTACTGTTCAGTGAACGCAAACTGTCGTAGATTATTAAAGACGGAAACCCCTCACTGCACCACAGCTGCTCCTTCAGCAAACCTCTTAATTCCTTCAGCACGAGCCCTTTATGATAAAGTGGCTGATCTATTTGACGAAATATTTGACTGAAGAAATCTCCACTGTGCTGCGCAAAAGCACTTACTAATACTGAACAGCGCATCATCGATGACGTAAACGTGCCCAGGCTCGAATGTAATGTGAGTGCGAGCCATCGGGGGAGACGGGACAAGCGTGCTTTGGCCCGGTTCAAGGCAACTGTACATAGTGTGAGTACGTCCTAAGTCTCTCGGCTGGCCTGGGACCGCCACAGGATCCCCCCCAGGAGGAGCTGGAGGAAGTGTCTGGGGAGAGGGAAGTCTAGGGTTCTCTCCTAAGACTGCTCCCCCCAAGACCCCGCCCTGGACAAATCGGTTGAAAATGAATGAATGAACCCTTTAATAATTGAAAACAGGTTTGTTGGAGCAGCGTTTGAACAGAATCCTATGGAATCCAGGGTTGATTATAGGATTGTGCACATAAGTTGGTTTGCACCCGCATTAATAAAGCTTTGGTGAAGCAGCTTTTGCAGACACCTTCAGTGTTAGGGTAGATACAATATCTAACTTGACATGAAGGGTAGCCATTAAAGGTGGATTTCCAAATCAAAGGCTGGCAACAACCCAGAGTTCTTTTGTACAGTGTAAAATATCCGAAAGGGCATATTTTCAGTGTTGTGTCATCCAGTCAACAGCAATGTATCCTTTACAGCCTTAAGGTGAAAATGGCATCAACCCTGACTAAGGTGCATTGAAATAACTAGAGCAACAAGAATATCAGTCACCTGTTTTCTTTGCAG
Seq C2 exon
ACTGTGGGAATCGTCCAGCAGTGACCCAGGAGAGGATTATTGGTGGTGTCACTGCCCGGCGAGGTGAATGGCCATGGGTGGGCAGTCTGCAGTACCAACGCATTCATCGCTGTGGAGCGACACTTATCCACTGCAAATGGCTCCTAACCGCCGCTCACTGCTTCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029841:ENSDART00000145551:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=NA C2=0.035
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(19.9=35.4),PF0005713=Ldl_recept_a=WD(100=28.5)
A:
NA
C2:
PF0008921=Trypsin=PU(19.5=77.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGCATTCCAGGAGAACC
R:
GGATAAGTGTCGCTCCACAGC
Band lengths:
357-2134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]