RnoINT0153309 @ rn6
Intron Retention
Gene
ENSRNOG00000022255 | Tmprss11e
Description
transmembrane protease, serine 11e [Source:MGI Symbol;Acc:MGI:3513175]
Coordinates
chr14:23099882-23101739:+
Coord C1 exon
chr14:23099882-23099920
Coord A exon
chr14:23099921-23101558
Coord C2 exon
chr14:23101559-23101739
Length
1638 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
GTCTCCTGTCTTCTTGGCAGGTT
3' ss Score
10.15
Exon sequences
Seq C1 exon
AAATCAACAAGACAGAATCAGACAACTATCTCAACCATT
Seq A exon
GTAAGTTGAATGTATTCATTAAGATTGTGTTACCTGATTGCAGAAAGGCAACACTCTAGAAATTTACATGTGCCTTGTGTTGATTTTCCAGAGATAGAATAGTTTGGATGATTTGTATGTAGATCATGGCCTTATGTTTTGTCTTTGAGATCCATTAAGGAATAGCAAGACTGGGAGAATTTCAGTGCCTGTGACCATGGGAACGGAGGGGAGTGAGTTAGACAACTGTTGAAGAAGAAGCAAAACCACTCTATGCATGTGTTTTTTTGTTTGTCTGTTTGTTTGTTTTTAGCTAGAGACATAAAATAAATGTCAATCTACTCTACACAAAAGTATTTTGATATTGCTTGTTTACAATAGAAATTATAGGTAATTGTGGACTGTGGTATATTTAATGAAATTAAATACGAAATTTTAAGGATCTAGAAATTTCTAGACCTAGTTCACTCTCTCATAGCAGAGCAATCATATATATTCAAAGAACACATTTAACAGTTACAAAACTGGTAACAGGATATTCATTTTTTAAATGAAAGGAGGGGTAGTGAGATGGTTTAGCAGGGAAAGGCACCTGTTGCTAAGTCGAACAACCTGAAGTCAATCCCTGGGACCCACAAGGAGGAAGTAGAGAACCAACTACTGCATGCTGTCCTCTAGCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTTTCTGTCTCTGTCTCTCTCTCTCACATACACACACACTCTCTCTCTCACACACTCTCTTTCTTTCTCTCTCTTATACACACACTTACATACATAGACACACATACAGACACACACACAGTATGTAGATACAAACATAGACACATGAAATACATAGATGTAATTAACTAAGATAGAAGCTGAAAATGTTGATTAATTCATAAATGTCACTAAACCTAGAACCAAATATAGAATCCCATTATTTTAATGGCACAGTTTCTGTATCAATAATGATTATAAACATAGGGTGTGCTGGTCCTGTGTTTGCCAAAAGGGATTCACAGGCCTGCCCAAAGCAGCTTACACTCTGATATAACTAGATGCTTGAGACAAACTCATGACCACGTACTTTTAAAACAGCAGCCTTCATCCCAGGGCCTTGCTATTGCAGAAGGTATCATGCACCAATGTAGCCCTTTCATCATGATTGTATGAGGAAATGTCCCTGAGGTCTAGTTTGTCTGGATTAGGAGGAGCTCCACTAAGGTTGCACAGGATAGTCGCTCATAACTGAAAGTCTTATGATGCTAAGTAGCAGTGGTACCCAGGCTGAGGAGAAACTCAACTGTAAGTGAAGCTCAGGGAGAATAACGACAAAACAACCGTCAACCACAGGTGGAATGCCACTGTTTGCGTTGTCATCAAGGAAGCATGAAAGAAGTCATCATTAATTTAATTTGGAAGCAGAGAAATTGATAGAGAGGTCTAAGGCGAATACATTTTTCTGAAGAGAATTTCACAACATGCACAGGAGTCGACTAAATAAAACGCTATTGTTCACAGAATGATAAAACCATGAGAAAATGTTTGATCTATTAATCACAAGATAAAAGAAAACCGGGATGCTTGAACGACTGCTGATTTGTCTCCTGTCTTCTTGGCAG
Seq C2 exon
GTTGTGGGACACGGCGGAACAAATCTACAGCACAGACAAGTGTGAGGATTGTCGGCGGGACATCAGCCGAAGAGGGAGAATGGCCTTGGCAAAGCAGCCTGCAGTGGGATGGGTCTCATCGCTGTGGAGCAACTTTGATCAGCAACACGTGGCTTGTGAGTGCCGCTCACTGCTTTCGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022255:ENSRNOT00000036948:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.115
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.5=72.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCAACAAGACAGAATCAGACAACT
R:
GAGCGGCACTCACAAGCC
Band lengths:
206-1844
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]