RnoINT0153470 @ rn6
Intron Retention
Gene
ENSRNOG00000032429 | Tmprss9
Description
transmembrane serine protease 9 [Source:RGD Symbol;Acc:1309581]
Coordinates
chr7:11685389-11688275:-
Coord C1 exon
chr7:11687957-11688275
Coord A exon
chr7:11685561-11687956
Coord C2 exon
chr7:11685389-11685560
Length
2396 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTC
5' ss Score
6.8
3' ss Seq
TCTCTCCTCTCCCCTGGCAGAGT
3' ss Score
11.11
Exon sequences
Seq C1 exon
GGTGACTCCGGGGGACCCCTGGTCTGCGAGGAGCCTTCCGGAAGGTTCTTCCTGGCTGGTGTCGTGAGCTGGGGAATCGGCTGTGCAGAAGCACGGCGCCCAGGGGTCTACACCCGAGTCACCAGGCTGCGGGATTGGATCTTGGAGGTGACCAGCTCGGCTGACACGCCCGTGGTCCCCACCGAGGCTCCAGCACCCATCACCCCCAGCACTCCCTGGCCTACCAGCCCCGAGAGCCGGGTGCCCAACACCACTGCTAAACCCACCGTTGCCCCCACCCCTGCGCCACTGCACCCCAGCACTGCGGCCAAGCCACAAG
Seq A exon
GTATTCTGGGCAGCATTCCCTTTCCAGGCGGGATCAGATCAGTACCTTCTCCCCTCAGCACTGAGTGGCAAAGAGACTACTGTGGTCTGTCATGAAGCACTCGGTGGACAAAAGATTGCTAAAAGAGTCTCCATCCACACCTGTTTTACTGGCTCCTGAGGGACTCAGCGAACACTCAATTGACTATTGATGTCTGCCAGGCAGCACTGGCTGAGGCTGGGCATCGATTGAAATCTTGAGGAGCTCAGGGTGGGGTTGGTACTCAACTGTCAGTGCCTGTCAGGAAAGACCGGGAGGATCGGTGATTGACTATATGTTTGGAGGAGGATGTCGAGACAGGGCTTCTCTTTGTAGCCCTAGCGGACCTTTAACTCTTTGTGTAGACCAGGCTGGCCTTGAACTCACTGTTAAAGGCATGCACCACCCGGCCTGGCTGTGATTAACTATTGATACCTGCCTAACACTGTGGGAGATTAATGGCTGATTACTGATCTCATTAGGGGGATGAAGGGGGCAGGCAAACTTGAGGACAACTTGCATGGATCGGTTTTCTCCTTCCATCAGGGAATTAAACTCAACTTATCAGGTTTGATGGCTAGGGCCTCTACCCAGGTGTCTGTAAATGGAGGGTTGGTGGTTGACTGCCAATGTCTGTCAGCCTTGAGTCCTCAGTGAGAAATGGGTGATGGAGCTTAACGGGAGATGGGCAGTTTATTATTGGCATCTGTCTTGACGTTCGGTGGGAGACTGGGAACTGGTTATTGATGTCTCCCATGAAGTGATCCATAGGGGGTTAGCAATTTATTACTGACATCTGCCGTGGGCACACATCTGTTACAGTTGGTCATTCTTCAGGTCTCTGGGAGTACAAGTTTTTATTGGATTTTTTTATTTACATTTCAAATGTTATCCCCTTTCCCAGTTTCCCATCCATAAGCCCCCTATCTCCTCCCCCCTTCTTCTATGGGTGTGTTCCCCTACTCATCCACCCACCCCTTCCCACCTCCCTGACCTGACATTCCCCTACACTGGGGGCCCAGCCCTGGCAGGACCAAGGGCTTCTCCTCCCATTGGTGCCCAACCAGGCCAGCCTCTGCTACATATGCAGTTGGAGCCCAGGATCTGTCCATGTGTACTCTGGGTAGTGGTTTAATCTCTGTGAGCTCTGGTTCTTGGCACTGTTGTTCTTATGGGGTTGGAAGCCCCTTCAGCTCCTTCAATCCTTTCTCTAAGGGAGTACTTTTTTAAATTTTAAGTTTTTAAATATTTATTTTTTATTTATATATATTAGTGTTTGCCTGCATGTAAGTCTGCATGAGGGTGTTACAGACACCCTTGGACTTACAAACAGTTGTGAGCCACCACGTGGATGCTGGGAATTGAACCCGGGTCCTCTGGAAGAGCAGGCAGTGCTCTTAATTGTTAAGCCATATCTCCACCCCCAATTTTAATTTTGTTTAAGACATTTATGCAGTGTGTTTTTATTTTCATTTATTTTTACACTCCAGATTTTATTTCCCTCCTGGTCCGCTCTCCGACTGTTCCACATCCCATACCTCTTCCCGGCGTCCCCCGTCCTCCCAATTTTAATATTTTTGAAACAGTTTTTTTCACTATAAGGTCTAGCTGGAGTAAAGCCCATTATATAGACCAAGTTAGCTTTGAACTCACAGAGATCCTCCTACCTCAGCCTCCAGGTGCTGGGATTAAAGGCCACCAGTGCTGGCTTCATTGAAAGCATATTATAGGGGTTGGGGATTTAGCTCAGCGGTAGAGTGCTTGCGCAAGGCCCTGGGTTCGGTTCCCTAGCTCCGGAAAAAAAAAAAAAAAGAAAGCATATTATAAGTGTGTGGGAAATGAGACCACACAAGGCAGCATGGTTAGAGGAGTGACCCACAAGGCCAGTGGGAAGTTGCACATTGGGCCTGTGGGAGCTGGGTGGCTGCCACGACCAGCGTGGTCCAGCTGGGTACTGTCCCTGTTCTGCACACCTCTGTTTTATCAGCCTGGAATCTCTTGGGTTTTTGTGTATTTTGTGATGCTGGACGTTGAAACCCCAGCCTGGTGAACCTGAAACAAGTTTCCTGCTTCTCTCCCTCTTCCTTCTCTCCTTCCCACCAGAAGGGTGGGAAACATCTTTTGTAACAGACTGAGTTCAAACTCAGAACAATCCCCCTGCCTCAGCTTCTGAGCTCCAGGATGACAGGCACTTGCCACCATGTAGATGTGTAGGTTCAGTGAATGTCAATCATTGCAAGTAGAGGTTTCCTCTTACAACCTCTAGCCTTGTGGCCCTGGGTGACGTCCCAATTGCTCTGTAGGTTACTCTGGGCCCAGAATGGGTGAACCCAGAGCAGATGACCACCCCCCACCCCCTCTCTCCTCTCCCCTGGCAG
Seq C2 exon
AGTGTGGGGCCAGGCCCGCGATGGACAAGCCCACTCGCATTGTGGGCGGGATCAGCGCCGTGTCCGGGGAGGTGCCCTGGCAGGCCAGCCTGAAGGAAGGATCCAGACATTTCTGCGGAGCCACCGTGGTGGGTGACCGCTGGCTGCTGTCCGCTGCCCACTGTTTCAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032429:ENSRNOT00000049221:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.476 A=NA C2=0.172
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.1=43.0)
A:
NA
C2:
PF0008921=Trypsin=PU(19.3=75.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]