BtaINT0150420 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009132 | TMPRSS2
Description
Bos taurus transmembrane protease, serine 2 (TMPRSS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001081585]
Coordinates
chr1:143231904-143234646:-
Coord C1 exon
chr1:143234533-143234646
Coord A exon
chr1:143232031-143234532
Coord C2 exon
chr1:143231904-143232030
Length
2502 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
CGGAGCCTCCCTTCCCACAGTTC
3' ss Score
8.1
Exon sequences
Seq C1 exon
TGGAGGACGAGTGTTCAGGGATGGAGTGCAGCTCCTCCGGGACCTGTGTTAGCCCCTCTCTCTGGTGCGATGGCATCCTGCACTGCCCCAGTGGCGAGGACGAGAACCGCTGCG
Seq A exon
GTAAGTGGCAGGGCTGCTTGTGAGAGGGGGCCACTTGGCTTGGGCACCGGGTGGCCCCCACAGAGGCCACAGCAAGGCAGGCACACGGTGCCAGGCTTGTATCCTGCACGTCAATCACTCCATCACCGACTCCATTGCTGGAGGCTGAACCTTGCATGCAAGCCCAGTTTTCAGGTGAGGAGACAGGCTCAGAGGGGGCGAGCTCCCACCGGGAGTCACACAGCCAGGGAATGGGAGACCACAGCCTAGGGCTAGACCACATTCATGCCCCAGCTGCCACGGGACATGACTAAAACAGCAAACTGTTTAAAATATCAAGTTGGGAGTGGGCTCTGTGTTTTCTAAGCAAGCTGCCTTTCGGGTGGCCTGTGTCCATGTCACAGGGTGGACACTGCTGCTGCTTTTATTTTCAATGAATTTTTCAGTAGCTGTCGGCTTTCCAGGTGGTGCTAGTGGTAAGGAATTCACCTCCCAGTGCAGGAGATGCAAGAGGCATGCGTTCGGTCCGTGGTTCGGGAAGATCCCCTGGAGAAGGGAAAGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTAGTGGATTATAGTCCATGGGGTTGCACAGAGTCAGACATGACTGAGCAACTGAACACAAAGTAGGTACAGCAGGGAAATGATGCCTGAGGATGAAGGTTGCGCTGATATCTGCTGAAGGCCCTACCCAAAGCCTGAAGCCTGCTGCATGCTCTGGGAGCTGTTAACTTTGAGTGCAAGTGATGCAGACAGAGGCTGTGCTCCACCCCAGAGCTGTCCATCCTTCTGTGGCCGTCCTGGGGAGATGGTTCTCTTTTATACCCCAAGTCCAGGTCAGGGCACCTGTGTGAGACACTGCTGTCCTGCCTGTGGATTCCCCTGCACTGGGAGTTCCTGGAGTTCTCGCTTACAGGAGAGGATTTGCACTTGGCAGACTCACTCTGCAAAGTGTCCACATAGTGCTTTGCCATTATGGGTGATAGTATATTTGTCACCATTTTCTTAAGTAAAGTTGAGAGTTTCTCAGGTTGAGCAGACGTGGTTACTCTATCGGATGGAATGGTGTTTGATGTTTTAATACCTGTGTCCACTCACGTGTCAATAACTCTAGCAAGACCAACTCATGATGTTGCCTGGAGAGACTTTCTCTTCTTAATGTTGAAGTTGTATTTACTTAAATACTGTTAAGAGTTAATGTCTTCAAATAGATCAAAATTCAGGAAGTAGCTAAGGGTAGGCAGTGAAAAATCTCACCTACCACTTCACTTACACTCTCACGTGATGCACTCACACACAGTCTCATGCTCACAGATACTAATACATACACTCATACACTGTGAGATTAGATAGAGGACAGGTGCTGGTCTCTGACCCCAGTTCCCAGCACAGGGCTCCTGAGACCATGGTGAATTTCAAGTGGTGAGACTACCTGGTGCATCTTTTGTTCTGATATCTGGTCCTTGACCCCAGCTCCTGACACCGAGCTCCTAAGGCCCTTGTCATTTCCTGGGTGATAGAAGGGTCTTTTGTTCTATGAAGCGATTCTGGGTGGCTCCTGAATGGCTCCTGTGGGCGCTGGTCACCACAAAGACTGAGCCACGGGTAGAAGCTTGGACCTGTCAGCCCCTCACCCCCCTGTCTTGAAACCACTTTCTGGTCAGAAAACCACTGATCCTTTTACTGTCTCCATGGTTTTGCCTTTTCCCAAGTGTCATGAGTTGGAATCCTACAGGATGTATGCAGGCTTTTCAGACTGGCTTCTTTCATCACTGACTGACGTGCACTTAAGCTTCCTCCATGTCTCTTCACAGCCTGGTGGCTCATGTCTCTTTAGGGCTGAATCATATTCCACTGTCTGGATGCGCTTACAGTTGGTTTATCCACTCACATGGTGGATGGAATCGCTTACCACGGAAGCATCAGGAAACGAGCTGGTCGCTCCACGGCGGCCTGAGCCTGAGTGTCAGGCCCTAAGCAACAACTAACCTGCTTTCCGTCTCCATAGATTTCTTCCTCCAGATGTCTCATAGAAATGGGGTCCTACAGTGTGTGGACTGTTGCCTGGCCTCTTGCAGTCAGGAGCATATCAATCACGTGTGAACGTTCACGCCTGTTGAGTCGAGTCAGTGTTTGATCCCCTTTCATGGACGAATAGCGTTCCATTGTGCGCAAGGACTGCCTTCTGTGCTCCTCCGTTGATGAATGTTTGGATGTTACCCCCTTCCAGCTCCTGTGAATAATGCTCTCATGAACATGTGTGCACAATGTTCATTTTTGTCTGAATACATGTTTTCAGCTCTGTCGGGTGAAGGGCACATTTTGGGAGGAAAGGCTAGATTCCGGGCATCTCCTTTCTGTAGCTGGGGGGAGGGAGCCAAGCCCTCTGGAACCTCTGTGTCCGGGGAGGGTGGGGCCCGCGTGAGGACAGGATGAAGGTCACGGTCTGGGACTCACCGGAGCCTCCCTTCCCACAG
Seq C2 exon
TTCGCCTCTATGGACCGAACTTCATCCTTCAGGTGTACTCAGCACAGAGGAAGTCCTGGCACCCCGTGTGCCAGGACGACTGGAGTGAGAGCTACGGGAGGGCGGCCTGCCAGGACATGGGCTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009132:ENSBTAT00000012036:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126692=P12=FE(45.2=100),PF0005713=Ldl_recept_a=WD(100=89.7)
A:
NA
C2:
PF126692=P12=PD(29.8=58.1),PF154941=SRCR_2=PU(39.6=88.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development